FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9797, 100 aa
  1>>>pF1KB9797 100 - 100 aa - 100 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5569+/-0.000253; mu= 10.2229+/- 0.016
 mean_var=95.2727+/-19.473, 0's: 0 Z-trim(122.5): 13  B-trim: 2072 in 1/54
 Lambda= 0.131398
 statistics sampled from 40765 (40779) to 40765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.478), width:  16
 Scan time:  4.620

The best scores are:                                      opt bits E(85289)
NP_689491 (OMIM: 300771) transcription elongation  ( 100)  705 142.0 1.5e-34
XP_016885144 (OMIM: 300771) PREDICTED: transcripti ( 100)  705 142.0 1.5e-34
NP_004771 (OMIM: 300237) transcription elongation  ( 159)  175 41.8 0.00037
NP_001006641 (OMIM: 300237) transcription elongati ( 159)  175 41.8 0.00037
NP_001006640 (OMIM: 300237) transcription elongati ( 159)  175 41.8 0.00037


>>NP_689491 (OMIM: 300771) transcription elongation fact  (100 aa)
 initn: 705 init1: 705 opt: 705  Z-score: 741.3  bits: 142.0 E(85289): 1.5e-34
Smith-Waterman score: 705; 100.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KB9 MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQSLEEFKEDIDYRHFKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQSLEEFKEDIDYRHFKDE
               10        20        30        40        50        60

               70        80        90       100
pF1KB9 EMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI
       ::::::::::::::::::::::::::::::::::::::::
NP_689 EMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI
               70        80        90       100

>>XP_016885144 (OMIM: 300771) PREDICTED: transcription e  (100 aa)
 initn: 705 init1: 705 opt: 705  Z-score: 741.3  bits: 142.0 E(85289): 1.5e-34
Smith-Waterman score: 705; 100.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KB9 MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQSLEEFKEDIDYRHFKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQSLEEFKEDIDYRHFKDE
               10        20        30        40        50        60

               70        80        90       100
pF1KB9 EMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI
       ::::::::::::::::::::::::::::::::::::::::
XP_016 EMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI
               70        80        90       100

>>NP_004771 (OMIM: 300237) transcription elongation fact  (159 aa)
 initn: 211 init1: 111 opt: 175  Z-score: 195.7  bits: 41.8 E(85289): 0.00037
Smith-Waterman score: 175; 37.0% identity (65.2% similar) in 92 aa overlap (9-100:80-159)

                                     10        20        30        
pF1KB9                       MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFR
                                     ::.:    :   :. : :  ...  ::.:.
NP_004 PEELLPELLPEMLLSEERPPQEGLSRKDLFEGRP----P--MEQPPCGVGKHKLEEGSFK
      50        60        70        80              90       100   

       40        50        60        70        80        90        
pF1KB9 QRLLQSLEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPY
       .:: .:  .:. ::  :....::: . .::    :::.. .:.:.  .:   . .:.:::
NP_004 ERLARSRPQFRGDIHGRNLSNEEMIQAADE----LEEMKRVRNKLMIMH--WKAKRSRPY
           110       120       130           140         150       

      100
pF1KB9 PI
       ::
NP_004 PI
         

>>NP_001006641 (OMIM: 300237) transcription elongation f  (159 aa)
 initn: 211 init1: 111 opt: 175  Z-score: 195.7  bits: 41.8 E(85289): 0.00037
Smith-Waterman score: 175; 37.0% identity (65.2% similar) in 92 aa overlap (9-100:80-159)

                                     10        20        30        
pF1KB9                       MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFR
                                     ::.:    :   :. : :  ...  ::.:.
NP_001 PEELLPELLPEMLLSEERPPQEGLSRKDLFEGRP----P--MEQPPCGVGKHKLEEGSFK
      50        60        70        80              90       100   

       40        50        60        70        80        90        
pF1KB9 QRLLQSLEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPY
       .:: .:  .:. ::  :....::: . .::    :::.. .:.:.  .:   . .:.:::
NP_001 ERLARSRPQFRGDIHGRNLSNEEMIQAADE----LEEMKRVRNKLMIMH--WKAKRSRPY
           110       120       130           140         150       

      100
pF1KB9 PI
       ::
NP_001 PI
         

>>NP_001006640 (OMIM: 300237) transcription elongation f  (159 aa)
 initn: 211 init1: 111 opt: 175  Z-score: 195.7  bits: 41.8 E(85289): 0.00037
Smith-Waterman score: 175; 37.0% identity (65.2% similar) in 92 aa overlap (9-100:80-159)

                                     10        20        30        
pF1KB9                       MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFR
                                     ::.:    :   :. : :  ...  ::.:.
NP_001 PEELLPELLPEMLLSEERPPQEGLSRKDLFEGRP----P--MEQPPCGVGKHKLEEGSFK
      50        60        70        80              90       100   

       40        50        60        70        80        90        
pF1KB9 QRLLQSLEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPY
       .:: .:  .:. ::  :....::: . .::    :::.. .:.:.  .:   . .:.:::
NP_001 ERLARSRPQFRGDIHGRNLSNEEMIQAADE----LEEMKRVRNKLMIMH--WKAKRSRPY
           110       120       130           140         150       

      100
pF1KB9 PI
       ::
NP_001 PI
         




100 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:01:05 2016 done: Fri Nov  4 19:01:05 2016
 Total Scan time:  4.620 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]