FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9793, 212 aa
  1>>>pF1KB9793 212 - 212 aa - 212 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0016+/-0.00027; mu= 2.8875+/- 0.017
 mean_var=161.4390+/-32.759, 0's: 0 Z-trim(124.4): 1  B-trim: 407 in 1/54
 Lambda= 0.100942
 statistics sampled from 46053 (46068) to 46053 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.833), E-opt: 0.2 (0.54), width:  16
 Scan time:  7.490

The best scores are:                                      opt bits E(85289)
NP_008952 (OMIM: 611309) protein DEPP [Homo sapien ( 212) 1475 225.3 5.7e-59


>>NP_008952 (OMIM: 611309) protein DEPP [Homo sapiens]    (212 aa)
 initn: 1475 init1: 1475 opt: 1475  Z-score: 1179.7  bits: 225.3 E(85289): 5.7e-59
Smith-Waterman score: 1475; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KB9 MRSRLLLSVAHLPTIRETTEEMLLGGPGQEPPPSPSLDDYVRSISRLAQPTSVLDKATAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MRSRLLLSVAHLPTIRETTEEMLLGGPGQEPPPSPSLDDYVRSISRLAQPTSVLDKATAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GQPRPPHRPAQACRKGRPAVSLRDITARFSGQQPTLPMADTVDPLDWLFGESQEKQPSQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GQPRPPHRPAQACRKGRPAVSLRDITARFSGQQPTLPMADTVDPLDWLFGESQEKQPSQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DLPRRTGPSAGLWGPHRQMDSSKPMGAPRGRLCEARMPGHSLARPPQDGQQSSDLRSWTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 DLPRRTGPSAGLWGPHRQMDSSKPMGAPRGRLCEARMPGHSLARPPQDGQQSSDLRSWTF
              130       140       150       160       170       180

              190       200       210  
pF1KB9 GQSAQAMASRHRPRPSSVLRTLYSHLPVIHEL
       ::::::::::::::::::::::::::::::::
NP_008 GQSAQAMASRHRPRPSSVLRTLYSHLPVIHEL
              190       200       210  




212 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:58:36 2016 done: Fri Nov  4 18:58:37 2016
 Total Scan time:  7.490 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]