FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9793, 212 aa
  1>>>pF1KB9793 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3995+/-0.000661; mu= 6.4776+/- 0.040
 mean_var=150.5219+/-30.536, 0's: 0 Z-trim(116.8): 5  B-trim: 97 in 1/50
 Lambda= 0.104538
 statistics sampled from 17451 (17454) to 17451 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.536), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS7210.1 C10orf10 gene_id:11067|Hs108|chr10      ( 212) 1475 232.7 1.3e-61


>>CCDS7210.1 C10orf10 gene_id:11067|Hs108|chr10           (212 aa)
 initn: 1475 init1: 1475 opt: 1475  Z-score: 1219.5  bits: 232.7 E(32554): 1.3e-61
Smith-Waterman score: 1475; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KB9 MRSRLLLSVAHLPTIRETTEEMLLGGPGQEPPPSPSLDDYVRSISRLAQPTSVLDKATAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MRSRLLLSVAHLPTIRETTEEMLLGGPGQEPPPSPSLDDYVRSISRLAQPTSVLDKATAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GQPRPPHRPAQACRKGRPAVSLRDITARFSGQQPTLPMADTVDPLDWLFGESQEKQPSQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GQPRPPHRPAQACRKGRPAVSLRDITARFSGQQPTLPMADTVDPLDWLFGESQEKQPSQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DLPRRTGPSAGLWGPHRQMDSSKPMGAPRGRLCEARMPGHSLARPPQDGQQSSDLRSWTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DLPRRTGPSAGLWGPHRQMDSSKPMGAPRGRLCEARMPGHSLARPPQDGQQSSDLRSWTF
              130       140       150       160       170       180

              190       200       210  
pF1KB9 GQSAQAMASRHRPRPSSVLRTLYSHLPVIHEL
       ::::::::::::::::::::::::::::::::
CCDS72 GQSAQAMASRHRPRPSSVLRTLYSHLPVIHEL
              190       200       210  




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:58:35 2016 done: Fri Nov  4 18:58:36 2016
 Total Scan time:  2.280 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]