Result of FASTA (ccds) for
pF1KB9785
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9785, 189 aa
1>>>pF1KB9785 189 - 189 aa - 189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0629+/-0.000803; mu= 14.2751+/- 0.048
mean_var=62.8342+/-12.029, 0's: 0 Z-trim(107.0): 21 B-trim: 67 in 1/50
Lambda= 0.161799
statistics sampled from 9320 (9337) to 9320 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.287), width: 16
Scan time: 1.670
The best scores are: opt bits E(32554)
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 1251 300.2 4.8e-82
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 1246 299.1 1.1e-81
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1064 256.6 6.6e-69
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1037 250.3 5.2e-67
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1033 249.4 1e-66
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1001 241.9 1.8e-64
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 995 240.5 4.7e-64
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 994 240.3 5.5e-64
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 985 238.2 2.4e-63
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 985 238.2 2.4e-63
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 958 231.9 1.9e-61
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 939 227.4 4e-60
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 917 222.3 1.4e-58
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 667 163.9 5.4e-41
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 383 97.7 5.1e-21
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 310 80.6 6.3e-16
>>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa)
initn: 1251 init1: 1251 opt: 1251 Z-score: 1586.4 bits: 300.2 E(32554): 4.8e-82
Smith-Waterman score: 1251; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
130 140 150 160 170 180
pF1KB9 LQERLRRKE
:::::::::
CCDS65 LQERLRRKE
>>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa)
initn: 1246 init1: 1246 opt: 1246 Z-score: 1580.1 bits: 299.1 E(32554): 1.1e-81
Smith-Waterman score: 1246; 99.5% identity (100.0% similar) in 189 aa overlap (1-189:2-190)
10 20 30 40 50
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
:::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
130 140 150 160 170 180
180
pF1KB9 NLQERLRRKE
::::::::::
CCDS65 NLQERLRRKE
190
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1064 init1: 1064 opt: 1064 Z-score: 1350.5 bits: 256.6 E(32554): 6.6e-69
Smith-Waterman score: 1064; 84.1% identity (94.2% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
:: ::.:::.::::.::: ::::::::.::::.::::::..:::.:::: ::: ::::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
:::::::::::::: :::::::.::: ::::.::::::.::: ::::: :::::::::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
::.::: : .:::::.::::.:.:::.::::::::::::::::::::::::::.:::.:
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
pF1KB9 LQERLRRKE
:::::::::
CCDS65 LQERLRRKE
>>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa)
initn: 1037 init1: 1037 opt: 1037 Z-score: 1316.5 bits: 250.3 E(32554): 5.2e-67
Smith-Waterman score: 1037; 84.7% identity (90.5% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
:: ::::::.:::::::::::: ::::.:::: .:::.:::::: ::: ::: :::::
CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
:::::::::::::: :::::::.::: ::::.:::::.:::: ::::. :::::::::::
CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
:::::: :: ::::: ::::::.:::.::::::::::::::::::::::::::.: : :
CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
130 140 150 160 170 180
pF1KB9 LQERLRRKE
:::::::::
CCDS65 LQERLRRKE
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1092 init1: 1033 opt: 1033 Z-score: 1311.4 bits: 249.4 E(32554): 1e-66
Smith-Waterman score: 1033; 82.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
:: ::::.:.::::::::::::::.: .::::.:::::::.::: :::: ::: :::::
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
:::::::::::::: :::::::..:: ::::.::.::::::: ::.:: ::.::.::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
:::.:: : :::::: ::::::::::.:::::: :::::::::::::::::::::.:::
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KB9 LQERLRRKE
::.:::::.
CCDS65 LQKRLRRKD
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 1001 init1: 1001 opt: 1001 Z-score: 1271.1 bits: 241.9 E(32554): 1.8e-64
Smith-Waterman score: 1001; 81.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
:: :.:::...::: :: ::::::::.:::: :::.:.:::::.:::: ::: ::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
:::::::::::::: :::::::.::: ::::.::::::.:...::.:: ::: :::::::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
:::.:: : ::::::.::::::::::.::::::::::::::::::::::::::.:::
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
130 140 150 160 170 180
pF1KB9 LQERLRRKE
.::::::::
CCDS64 FQERLRRKE
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1010 init1: 995 opt: 995 Z-score: 1263.5 bits: 240.5 E(32554): 4.7e-64
Smith-Waterman score: 995; 79.9% identity (92.1% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
:: :.:::...::: :: ::::::::.:::: :::.:.:::::.::: ::: ::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
::.:::::.::::: :::::::.::: ::::.:.::::::...::.:: :::::::::::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
:::.:: : :::::: ::::::.:::.::::::::::::::::::::::::::::.:::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KB9 LQERLRRKE
::.:::::.
CCDS64 LQKRLRRKD
>>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa)
initn: 992 init1: 650 opt: 994 Z-score: 1262.3 bits: 240.3 E(32554): 5.5e-64
Smith-Waterman score: 994; 82.0% identity (89.4% similar) in 189 aa overlap (1-189:1-188)
10 20 30 40 50 60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
:: ::::..:.:::::::::.:::::.:::: .:::::::::: ::: ::: ::::::
CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
:::::: ::::::: .: ::::.::::::::.:::::::::: ::::: :::::::::::
CCDS65 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
70 80 90 100 110
130 140 150 160 170 180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
:::.: : :::::. ::::::.:::.:::::: :::::::::::::::::::.:::::
CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
120 130 140 150 160 170
pF1KB9 LQERLRRKE
::: :: ::
CCDS65 LQESLRSKE
180
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 1005 init1: 985 opt: 985 Z-score: 1250.9 bits: 238.2 E(32554): 2.4e-63
Smith-Waterman score: 985; 78.8% identity (92.1% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
:: :.:::...::: :: ::::::::.:::: :::.:.:::::.:::: ::: ::::::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
.::::::::::::. :::::::.::: ::::.:.::::::...::.:: ::::::::.::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
:::.:: . :::::: ::::::.:::.::::::::::::::::::::::::::::.:::
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KB9 LQERLRRKE
::. ::::.
CCDS65 LQKILRRKD
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 1000 init1: 985 opt: 985 Z-score: 1250.9 bits: 238.2 E(32554): 2.4e-63
Smith-Waterman score: 985; 78.8% identity (91.5% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
:: :.:::...::: :: ::::::::.:::: :::.:.::.::.:::: ::: :::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
.::::::::::::: :::::::.::: ::::.:.::::::...::.:: :::::::::::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
:::.:: : :::::: ::::::.:::.:::::: :.:::::::::::::::::::.:::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KB9 LQERLRRKE
::.:::::.
CCDS64 LQKRLRRKD
189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:54:54 2016 done: Fri Nov 4 18:54:54 2016
Total Scan time: 1.670 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]