Result of FASTA (omim) for
pF1KB9762
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9762, 800 aa
1>>>pF1KB9762 800 - 800 aa - 800 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7500+/-0.000449; mu= 7.9301+/- 0.028
mean_var=315.4582+/-65.844, 0's: 0 Z-trim(120.9): 384 B-trim: 1363 in 1/52
Lambda= 0.072211
statistics sampled from 36414 (36864) to 36414 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.432), width: 16
Scan time: 15.210
The best scores are: opt bits E(85289)
NP_008882 (OMIM: 601787) transcription initiation ( 800) 5344 571.1 6.4e-162
NP_620640 (OMIM: 601787) transcription initiation ( 745) 3663 396.0 3.2e-109
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655) 480 64.3 2e-09
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655) 480 64.3 2e-09
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655) 480 64.3 2e-09
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658) 480 64.3 2e-09
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672) 480 64.3 2e-09
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672) 480 64.3 2e-09
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672) 480 64.3 2e-09
XP_016878349 (OMIM: 602703,616212) PREDICTED: kata ( 675) 480 64.3 2e-09
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675) 480 64.3 2e-09
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675) 480 64.3 2e-09
XP_011521112 (OMIM: 602703,616212) PREDICTED: kata ( 675) 480 64.3 2e-09
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 453 61.3 1.1e-08
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 453 61.3 1.1e-08
XP_011530390 (OMIM: 606278) PREDICTED: F-box/WD re ( 540) 432 59.2 5.5e-08
NP_001013433 (OMIM: 606278) F-box/WD repeat-contai ( 589) 432 59.3 5.8e-08
NP_060785 (OMIM: 606278) F-box/WD repeat-containin ( 627) 432 59.3 6.1e-08
XP_011530389 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 432 59.3 6.4e-08
XP_011530388 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 432 59.3 6.4e-08
NP_361014 (OMIM: 606278) F-box/WD repeat-containin ( 707) 432 59.4 6.6e-08
XP_011530386 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 432 59.4 6.6e-08
XP_011530387 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 432 59.4 6.6e-08
XP_016863851 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 432 59.4 6.6e-08
XP_011530385 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 432 59.4 6.6e-08
XP_011519465 (OMIM: 604447) PREDICTED: guanine nuc ( 301) 409 56.5 2e-07
NP_006569 (OMIM: 604447) guanine nucleotide-bindin ( 353) 409 56.6 2.2e-07
XP_011519464 (OMIM: 604447) PREDICTED: guanine nuc ( 353) 409 56.6 2.2e-07
XP_016856550 (OMIM: 139380,613065,616973) PREDICTE ( 340) 408 56.5 2.3e-07
XP_016856549 (OMIM: 139380,613065,616973) PREDICTE ( 340) 408 56.5 2.3e-07
NP_001269468 (OMIM: 139380,613065,616973) guanine ( 340) 408 56.5 2.3e-07
XP_016856548 (OMIM: 139380,613065,616973) PREDICTE ( 340) 408 56.5 2.3e-07
NP_002065 (OMIM: 139380,613065,616973) guanine nuc ( 340) 408 56.5 2.3e-07
NP_057278 (OMIM: 604447) guanine nucleotide-bindin ( 395) 409 56.6 2.4e-07
XP_016877356 (OMIM: 604447) PREDICTED: guanine nuc ( 212) 402 55.6 2.7e-07
NP_055317 (OMIM: 608330) pre-mRNA-processing facto ( 504) 397 55.5 6.6e-07
NP_067642 (OMIM: 610863,615185) guanine nucleotide ( 340) 387 54.3 1.1e-06
XP_006713784 (OMIM: 610863,615185) PREDICTED: guan ( 340) 387 54.3 1.1e-06
XP_005247749 (OMIM: 610863,615185) PREDICTED: guan ( 340) 387 54.3 1.1e-06
XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 ( 321) 380 53.5 1.7e-06
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359) 380 53.6 1.8e-06
NP_001155053 (OMIM: 614783,614813) POC1 centriolar ( 369) 380 53.6 1.9e-06
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 377 53.1 1.9e-06
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 377 53.1 1.9e-06
NP_056241 (OMIM: 614783,614813) POC1 centriolar pr ( 407) 380 53.6 2e-06
XP_011538622 (OMIM: 603482) PREDICTED: F-box/WD re ( 537) 378 53.6 2.7e-06
XP_016872363 (OMIM: 603482) PREDICTED: F-box/WD re ( 543) 378 53.6 2.7e-06
NP_003930 (OMIM: 603482) F-box/WD repeat-containin ( 569) 378 53.6 2.8e-06
NP_001243785 (OMIM: 603482) F-box/WD repeat-contai ( 579) 378 53.6 2.9e-06
NP_001231855 (OMIM: 607795,615922) U4/U6 small nuc ( 521) 377 53.5 2.9e-06
>>NP_008882 (OMIM: 601787) transcription initiation fact (800 aa)
initn: 5344 init1: 5344 opt: 5344 Z-score: 3028.0 bits: 571.1 E(85289): 6.4e-162
Smith-Waterman score: 5344; 100.0% identity (100.0% similar) in 800 aa overlap (1-800:1-800)
10 20 30 40 50 60
pF1KB9 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 GGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 PAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
730 740 750 760 770 780
790 800
pF1KB9 VHLHFTRRNLVLAAGAYSPQ
::::::::::::::::::::
NP_008 VHLHFTRRNLVLAAGAYSPQ
790 800
>>NP_620640 (OMIM: 601787) transcription initiation fact (745 aa)
initn: 3923 init1: 3662 opt: 3663 Z-score: 2081.9 bits: 396.0 E(85289): 3.2e-109
Smith-Waterman score: 4831; 93.1% identity (93.1% similar) in 800 aa overlap (1-800:1-745)
10 20 30 40 50 60
pF1KB9 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 GGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 GGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 GLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 PAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
:::::::::::::::
NP_620 GHSGPVYGASFSPDR---------------------------------------------
550
610 620 630 640 650 660
pF1KB9 VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 ----------LWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
560 570 580 590 600
670 680 690 700 710 720
pF1KB9 CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
610 620 630 640 650 660
730 740 750 760 770 780
pF1KB9 RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
670 680 690 700 710 720
790 800
pF1KB9 VHLHFTRRNLVLAAGAYSPQ
::::::::::::::::::::
NP_620 VHLHFTRRNLVLAAGAYSPQ
730 740
>>XP_016878353 (OMIM: 602703,616212) PREDICTED: katanin (655 aa)
initn: 463 init1: 463 opt: 480 Z-score: 290.4 bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)
510 520 530 540 550 560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
::: .:. . .:.. : . .. . ::.
XP_016 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
10 20 30
570 580 590 600 610
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
.. .: : :::.. .:... ::. :: ..... .:.:... :.: . .
XP_016 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
40 50 60 70 80 90
620 630 640 650 660 670
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
:: . :: :.. ::: ...::.:: : ...:::. .:: . ::. .. : :::
XP_016 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
100 110 120 130 140 150
680 690 700 710 720 730
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
.:..::..: : : :::. : :..:. ::: : ..: . .::::: : :.:.::
XP_016 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
160 170 180 190 200 210
740 750 760 770 780 790
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
XP_016 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
220 230 240 250 260 270
>>NP_005877 (OMIM: 602703,616212) katanin p80 WD40 repea (655 aa)
initn: 463 init1: 463 opt: 480 Z-score: 290.4 bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)
510 520 530 540 550 560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
::: .:. . .:.. : . .. . ::.
NP_005 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
10 20 30
570 580 590 600 610
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
.. .: : :::.. .:... ::. :: ..... .:.:... :.: . .
NP_005 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
40 50 60 70 80 90
620 630 640 650 660 670
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
:: . :: :.. ::: ...::.:: : ...:::. .:: . ::. .. : :::
NP_005 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
100 110 120 130 140 150
680 690 700 710 720 730
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
.:..::..: : : :::. : :..:. ::: : ..: . .::::: : :.:.::
NP_005 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
160 170 180 190 200 210
740 750 760 770 780 790
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
NP_005 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
220 230 240 250 260 270
>>XP_016878352 (OMIM: 602703,616212) PREDICTED: katanin (655 aa)
initn: 463 init1: 463 opt: 480 Z-score: 290.4 bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)
510 520 530 540 550 560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
::: .:. . .:.. : . .. . ::.
XP_016 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
10 20 30
570 580 590 600 610
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
.. .: : :::.. .:... ::. :: ..... .:.:... :.: . .
XP_016 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
40 50 60 70 80 90
620 630 640 650 660 670
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
:: . :: :.. ::: ...::.:: : ...:::. .:: . ::. .. : :::
XP_016 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
100 110 120 130 140 150
680 690 700 710 720 730
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
.:..::..: : : :::. : :..:. ::: : ..: . .::::: : :.:.::
XP_016 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
160 170 180 190 200 210
740 750 760 770 780 790
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
XP_016 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
220 230 240 250 260 270
>>XP_006721186 (OMIM: 602703,616212) PREDICTED: katanin (658 aa)
initn: 463 init1: 463 opt: 480 Z-score: 290.4 bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)
510 520 530 540 550 560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
::: .:. . .:.. : . .. . ::.
XP_006 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
10 20 30
570 580 590 600 610
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
.. .: : :::.. .:... ::. :: ..... .:.:... :.: . .
XP_006 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
40 50 60 70 80 90
620 630 640 650 660 670
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
:: . :: :.. ::: ...::.:: : ...:::. .:: . ::. .. : :::
XP_006 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
100 110 120 130 140 150
680 690 700 710 720 730
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
.:..::..: : : :::. : :..:. ::: : ..: . .::::: : :.:.::
XP_006 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
160 170 180 190 200 210
740 750 760 770 780 790
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
XP_006 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
220 230 240 250 260 270
>>XP_005255829 (OMIM: 602703,616212) PREDICTED: katanin (672 aa)
initn: 463 init1: 463 opt: 480 Z-score: 290.3 bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)
510 520 530 540 550 560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
::: .:. . .:.. : . .. . ::.
XP_005 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
10 20 30
570 580 590 600 610
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
.. .: : :::.. .:... ::. :: ..... .:.:... :.: . .
XP_005 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
40 50 60 70 80 90
620 630 640 650 660 670
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
:: . :: :.. ::: ...::.:: : ...:::. .:: . ::. .. : :::
XP_005 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
100 110 120 130 140 150
680 690 700 710 720 730
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
.:..::..: : : :::. : :..:. ::: : ..: . .::::: : :.:.::
XP_005 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
160 170 180 190 200 210
740 750 760 770 780 790
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
XP_005 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
220 230 240 250 260 270
>>XP_016878350 (OMIM: 602703,616212) PREDICTED: katanin (672 aa)
initn: 463 init1: 463 opt: 480 Z-score: 290.3 bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)
510 520 530 540 550 560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
::: .:. . .:.. : . .. . ::.
XP_016 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
10 20 30
570 580 590 600 610
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
.. .: : :::.. .:... ::. :: ..... .:.:... :.: . .
XP_016 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
40 50 60 70 80 90
620 630 640 650 660 670
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
:: . :: :.. ::: ...::.:: : ...:::. .:: . ::. .. : :::
XP_016 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
100 110 120 130 140 150
680 690 700 710 720 730
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
.:..::..: : : :::. : :..:. ::: : ..: . .::::: : :.:.::
XP_016 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
160 170 180 190 200 210
740 750 760 770 780 790
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
XP_016 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
220 230 240 250 260 270
>>XP_016878351 (OMIM: 602703,616212) PREDICTED: katanin (672 aa)
initn: 463 init1: 463 opt: 480 Z-score: 290.3 bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)
510 520 530 540 550 560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
::: .:. . .:.. : . .. . ::.
XP_016 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
10 20 30
570 580 590 600 610
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
.. .: : :::.. .:... ::. :: ..... .:.:... :.: . .
XP_016 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
40 50 60 70 80 90
620 630 640 650 660 670
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
:: . :: :.. ::: ...::.:: : ...:::. .:: . ::. .. : :::
XP_016 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
100 110 120 130 140 150
680 690 700 710 720 730
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
.:..::..: : : :::. : :..:. ::: : ..: . .::::: : :.:.::
XP_016 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
160 170 180 190 200 210
740 750 760 770 780 790
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
XP_016 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
220 230 240 250 260 270
>>XP_016878349 (OMIM: 602703,616212) PREDICTED: katanin (675 aa)
initn: 463 init1: 463 opt: 480 Z-score: 290.2 bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)
510 520 530 540 550 560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
::: .:. . .:.. : . .. . ::.
XP_016 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
10 20 30
570 580 590 600 610
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
.. .: : :::.. .:... ::. :: ..... .:.:... :.: . .
XP_016 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
40 50 60 70 80 90
620 630 640 650 660 670
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
:: . :: :.. ::: ...::.:: : ...:::. .:: . ::. .. : :::
XP_016 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
100 110 120 130 140 150
680 690 700 710 720 730
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
.:..::..: : : :::. : :..:. ::: : ..: . .::::: : :.:.::
XP_016 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
160 170 180 190 200 210
740 750 760 770 780 790
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
XP_016 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
220 230 240 250 260 270
800 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:44:14 2016 done: Fri Nov 4 18:44:17 2016
Total Scan time: 15.210 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]