Result of FASTA (omim) for
pF1KB9701
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9701, 320 aa
1>>>pF1KB9701 320 - 320 aa - 320 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.4670+/-0.000444; mu= -8.1023+/- 0.028
mean_var=529.3283+/-109.869, 0's: 0 Z-trim(126.0): 121 B-trim: 2453 in 2/58
Lambda= 0.055746
statistics sampled from 50805 (50978) to 50805 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.85), E-opt: 0.2 (0.598), width: 16
Scan time: 7.200
The best scores are: opt bits E(85289)
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 2264 195.6 1.1e-49
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 756 74.2 3.1e-13
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 747 73.5 5.2e-13
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 705 70.1 5.5e-12
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 705 70.1 5.5e-12
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 511 54.6 2.8e-07
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 498 53.5 5.7e-07
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 457 50.1 5e-06
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 441 49.0 1.4e-05
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 438 48.6 1.4e-05
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 438 48.6 1.4e-05
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 438 48.6 1.4e-05
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 418 47.0 4.5e-05
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 417 47.3 7.2e-05
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 417 47.3 7.2e-05
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 417 47.3 7.2e-05
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 417 47.3 7.2e-05
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 417 47.3 7.2e-05
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 417 47.3 7.2e-05
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 417 47.3 7.2e-05
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 407 46.4 0.00012
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 407 46.4 0.00012
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 407 46.4 0.00012
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 407 46.4 0.00012
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 407 46.4 0.00012
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 407 46.4 0.00012
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 407 46.4 0.00012
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 407 46.4 0.00012
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 396 45.3 0.00017
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 388 44.4 0.00018
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 388 44.6 0.00024
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 393 45.3 0.00026
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 374 43.5 0.00052
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 366 42.8 0.00078
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 369 43.2 0.00084
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 365 42.9 0.001
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 358 42.4 0.0017
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 354 42.0 0.0018
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 352 41.8 0.0021
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 348 41.5 0.0027
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 345 41.3 0.0031
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 346 41.4 0.0033
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 346 41.4 0.0033
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 346 41.5 0.0037
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 346 41.5 0.0037
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 346 41.5 0.0037
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 346 41.5 0.0037
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 346 41.5 0.0037
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 346 41.5 0.0037
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 345 41.5 0.0039
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 2264 init1: 2264 opt: 2264 Z-score: 1012.8 bits: 195.6 E(85289): 1.1e-49
Smith-Waterman score: 2264; 99.4% identity (99.4% similar) in 320 aa overlap (1-320:1-320)
10 20 30 40 50 60
pF1KB9 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PHAGGGREPPASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQAKGPAHGLHASHVLQPQPPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_002 AQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQ
250 260 270 280 290 300
310 320
pF1KB9 SPHLHPHPHPSTSTPVPSSI
::::::::::::::::::::
NP_002 SPHLHPHPHPSTSTPVPSSI
310 320
>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa)
initn: 904 init1: 691 opt: 756 Z-score: 358.6 bits: 74.2 E(85289): 3.1e-13
Smith-Waterman score: 868; 49.7% identity (63.9% similar) in 296 aa overlap (1-296:1-243)
10 20 30 40 50 60
pF1KB9 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL
:.::::::::::..::::: :::.: : .: .:: : :. .. .:
NP_076 MAMSSFLINSNYVDPKFPPCEEYSQ-SDYLPSDHSPGYYAGGQR------RESSFQ----
10 20 30 40
70 80 90 100 110 120
pF1KB9 PHAGGGREPPASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP
:.:: ::. . . :.:. : : :: : ::
NP_076 PEAGFGRRAACTVQRYAACRDPGPP------------------------PPPPPPPPPPP
50 60 70 80
130 140 150 160 170 180
pF1KB9 AQAKGPAHGLHASHVLQPQPPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA
. .: : ::: :. : .::::. ..: : .. : :
NP_076 PPGLSPR---------APAPPPA---GALLPEPGQRCEAVSSSPPPPPCAQNPLHP----
90 100 110 120
190 200 210 220 230 240
pF1KB9 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL
:: :::::::::.:.:::.:::.: ::::::::::::::::::::::::.::::
NP_076 --SPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYL
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB9 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQ
:::::.::::.:::::::.:::::::::::::::::::::.::...:....::::.
NP_076 TRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGRPNGG
190 200 210 220 230 240
310 320
pF1KB9 SPHLHPHPHPSTSTPVPSSI
NP_076 PRAL
250
>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo (255 aa)
initn: 815 init1: 622 opt: 747 Z-score: 354.6 bits: 73.5 E(85289): 5.2e-13
Smith-Waterman score: 803; 49.4% identity (61.7% similar) in 308 aa overlap (1-306:1-243)
10 20 30 40 50 60
pF1KB9 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL
:.:::...::.:..::::: ::: : .: : .:. : : :
NP_055 MVMSSYMVNSKYVDPKFPPCEEYLQ-GGYLGEQGADYYGGGAQ-----------------
10 20 30 40
70 80 90 100 110 120
pF1KB9 PHAGGGREPPASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP
:. .::. : :: : : :.: :..:: : :
NP_055 ---GADFQPPGLY--PR-------------PDFGE----QPFG---GSGPG--PGSALP-
50 60 70
130 140 150 160 170
pF1KB9 AQAKGPAHGLHASHVLQPQPPPPLQPRAVPPAAPRRCEAAPATPGVPA-GGSAPACPLLL
:...: : ..: : : : : .:: :: ::. : . : : :
NP_055 ARGHGQEPGGPGGHYAAPGEPCPAPP--APPPAP--------LPGARAYSQSDPKQP---
80 90 100 110 120
180 190 200 210 220 230
pF1KB9 ADKSPLGLKGKEP-VVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNR
: : :.: ::::::::.::..:::.:.:::::::::::::::::::::::::::
NP_055 ----PSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNR
130 140 150 160 170
240 250 260 270 280 290
pF1KB9 YLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQ
::::::::::::::::::::.::::::::::::::::::::: :::.:.:.:. . :
NP_055 YLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVAP
180 190 200 210 220 230
300 310 320
pF1KB9 TQSPHLHPHPHPSTSTPVPSSI
.: ::.:
NP_055 SQ--HLQPMAKDHHTDLTTL
240 250
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 853 init1: 659 opt: 705 Z-score: 336.2 bits: 70.1 E(85289): 5.5e-12
Smith-Waterman score: 758; 46.0% identity (59.8% similar) in 311 aa overlap (1-306:1-252)
10 20 30 40 50 60
pF1KB9 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL
: :::.:..::::.::::: :::.:.: : : . .. .
NP_705 MIMSSYLMDSNYIDPKFPPCEEYSQNS---------------YIPEHSPEYYGRTRESGF
10 20 30 40
70 80 90 100 110 120
pF1KB9 PHAGGGREPPASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP
: :: :: :.:: .. .. : . :: . :
NP_705 QHHHQELYPPPP---PR----PSYPERQ----YSCTSLQGPGNSRG-----------HGP
50 60 70 80
130 140 150 160 170 180
pF1KB9 AQAKGPAHGLHASHVLQPQPPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA
::: : : ... . .: : .: :.:. :: :::
NP_705 AQA-GHHHPEKSQSLCEPAP----------------LSGASASPS-PA---PPACSQPAP
90 100 110 120
190 200 210 220 230 240
pF1KB9 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL
:. : . .:.:.:::::::::::.:::.::::::::::::::::::::::::::.::::
NP_705 DH-PSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYL
130 140 150 160 170 180
250 260 270 280 290
pF1KB9 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASA-----SAGPPG
::::::::::.:::::::.:::::::::::::::.:::::.::. :.: ::. ::
NP_705 TRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPG
190 200 210 220 230 240
300 310 320
pF1KB9 KAQTQSPHLHPHPHPSTSTPVPSSI
.. .: :
NP_705 TSEDHSQSATPPEQQRAEDITRL
250 260
>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 853 init1: 659 opt: 705 Z-score: 336.2 bits: 70.1 E(85289): 5.5e-12
Smith-Waterman score: 758; 46.0% identity (59.8% similar) in 311 aa overlap (1-306:1-252)
10 20 30 40 50 60
pF1KB9 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL
: :::.:..::::.::::: :::.:.: : : . .. .
NP_055 MIMSSYLMDSNYIDPKFPPCEEYSQNS---------------YIPEHSPEYYGRTRESGF
10 20 30 40
70 80 90 100 110 120
pF1KB9 PHAGGGREPPASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP
: :: :: :.:: .. .. : . :: . :
NP_055 QHHHQELYPPPP---PR----PSYPERQ----YSCTSLQGPGNSRG-----------HGP
50 60 70 80
130 140 150 160 170 180
pF1KB9 AQAKGPAHGLHASHVLQPQPPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA
::: : : ... . .: : .: :.:. :: :::
NP_055 AQA-GHHHPEKSQSLCEPAP----------------LSGASASPS-PA---PPACSQPAP
90 100 110 120
190 200 210 220 230 240
pF1KB9 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL
:. : . .:.:.:::::::::::.:::.::::::::::::::::::::::::::.::::
NP_055 DH-PSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYL
130 140 150 160 170 180
250 260 270 280 290
pF1KB9 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASA-----SAGPPG
::::::::::.:::::::.:::::::::::::::.:::::.::. :.: ::. ::
NP_055 TRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPG
190 200 210 220 230 240
300 310 320
pF1KB9 KAQTQSPHLHPHPHPSTSTPVPSSI
.. .: :
NP_055 TSEDHSQSATPPEQQRAEDITRL
250 260
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 505 init1: 393 opt: 511 Z-score: 251.7 bits: 54.6 E(85289): 2.8e-07
Smith-Waterman score: 511; 45.3% identity (65.7% similar) in 201 aa overlap (90-287:73-267)
60 70 80 90 100 110
pF1KB9 LPHAGGGREPPASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQP
: : ..: : : : :. . :::.
NP_061 GRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPR-YSQPATSTHSPQPDPL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB9 PAQAKGPAHGLHASHVLQPQPPPPLQPRAVPPAAPRRCEAAPATPGVPAGG--SAPACPL
: .: .:. : . : . . : :. . . .. :. .:. .:::
NP_061 PCSAVAPSPGSDSHH--GGKNSLSNSSGASADAGSTHISSREGV-GTASGAEEDAPASSE
110 120 130 140 150
180 190 200 210 220 230
pF1KB9 LLADKS-PLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHF
. .: : .: .::::.:.:.: . . .: : ::.:::::: :.:::::::::
NP_061 QASAQSEPSPAPPAQPQIYPWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHF
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB9 NRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGK
::::::::::::::.:::::::.::::::::::::::.:: . .: ....:
NP_061 NRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
220 230 240 250 260 270
300 310 320
pF1KB9 AQTQSPHLHPHPHPSTSTPVPSSI
>>NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [Homo (269 aa)
initn: 446 init1: 404 opt: 498 Z-score: 246.1 bits: 53.5 E(85289): 5.7e-07
Smith-Waterman score: 528; 35.6% identity (59.2% similar) in 292 aa overlap (3-287:1-266)
10 20 30 40 50
pF1KB9 MTMSSFLINSNYIEPKFPPFEEYAQ-HSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQ
:::...:: . ..: .: . :::.. .: .:..: : : .
NP_002 MSSYFVNS--FSGRYPNGPDYQLLNYGSGSSLSG-----SYRDPAAMHTGSYGYNYNG
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 LPHAGGGREPPASYYAPRTAREPAYPAAALYP----AHGAADTAYPYGY--RGGASPGRP
. . . .:... :.:: : : : .. . . : . .: : :
NP_002 MDLSVNRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 PQPEQPPAQAKGPAHGLHASHVLQPQPPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAP
:. .: :: . . . . ... .: . : : : . . :. . :
NP_002 PSASSPSDQATSASSSANFTEI----------DEASASSEP---EEAASQLSSPSLARAQ
120 130 140 150
180 190 200 210 220 230
pF1KB9 ACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKE
:. . .: .:. : ..:::.:.:.: ...: . ::.:::::: :.::::::
NP_002 PEPMATSTAAP---EGQTPQIFPWMRKLHIS---HDMTGPDGKRARTAYTRYQTLELEKE
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB9 FHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGP
:::::::::::::::::.:::::::.::::::::::::::.:: . .. ...::
NP_002 FHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
220 230 240 250 260
300 310 320
pF1KB9 PGKAQTQSPHLHPHPHPSTSTPVPSSI
>>NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [Homo (222 aa)
initn: 474 init1: 365 opt: 457 Z-score: 229.2 bits: 50.1 E(85289): 5e-06
Smith-Waterman score: 472; 42.9% identity (58.0% similar) in 226 aa overlap (71-276:2-216)
50 60 70 80 90
pF1KB9 GYQQPPAPPTQHLPLQQPQLPHAGGGREPPASYYAPRTARE-PAYPAAALYPA--HGAAD
.:: : .. : :: . .:.:.
NP_061 MSSYVANSFYKQSPNIPAYNMQTCGNYGSAS
10 20 30
100 110 120 130 140 150
pF1KB9 TAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQPP-PPLQPRAVPPAAPRR
. : : : . :: .. ::. . . .: : . :.: :: :
NP_061 EVQASRYCYG---GLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGR
40 50 60 70 80
160 170 180 190 200
pF1KB9 CEAAPATPGVPAGGSA-PACPLLLADKS-------------PLGLKGKE--PVVYPWMKK
:::: .::. . .: :: : :: : ::. : .:::: :
NP_061 DEAAPLNPGMYSQKAARPA--LEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTK
90 100 110 120 130 140
210 220 230 240 250 260
pF1KB9 IHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVK
.:.: . . :::::.::: :.::::::::::::::::::::::..:::.:::.:
NP_061 LHMS------HETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIK
150 160 170 180 190 200
270 280 290 300 310 320
pF1KB9 IWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPVPSSI
::::::::::::: :.
NP_061 IWFQNRRMKWKKDSKMKSKEAL
210 220
>>XP_011523029 (OMIM: 142961) PREDICTED: homeobox protei (288 aa)
initn: 447 init1: 352 opt: 441 Z-score: 221.0 bits: 49.0 E(85289): 1.4e-05
Smith-Waterman score: 457; 42.8% identity (55.9% similar) in 229 aa overlap (70-276:52-271)
40 50 60 70 80 90
pF1KB9 PGYQQPPAPPTQHLPLQQPQLPHAGGGREPPASYYAPRTAREP--AYPAAALYPAHGAAD
:: ::. : .: . . .:. :.
XP_011 RRREPRSTGRQFCGFNAARRSDYKTQQIINPAEQQRPRAPPLPMSSYFVNSTFPVTLASG
30 40 50 60 70 80
100 110 120 130 140 150
pF1KB9 TA-----YPYGYRGGASPGRP-PQPEQP-PAQAKGPAHGLHASHVLQPQPPPPLQPRAVP
: : :.: : : : : :.: :: :. : : ::.:
XP_011 QESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKG-----FATSSYYP-PAGGGYGRAAP
90 100 110 120 130
160 170 180 190
pF1KB9 ------PAAPRRCEAAPATPGV---PAGGSAPACPLLLADKSPLG----LKGKEPVVYPW
:: :. :.: : :. : : ::: .: : . :: :::
XP_011 CDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPV-YPW
140 150 160 170 180 190
200 210 220 230 240 250
pF1KB9 MKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSER
:.... . : : : .:.: .::: :.::::::::.::::::::::::::.:::.::
XP_011 MQRMN--SCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTER
200 210 220 230 240 250
260 270 280 290 300 310
pF1KB9 QVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPVP
:.:::::::::::::. ::
XP_011 QIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
260 270 280
>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo (224 aa)
initn: 447 init1: 352 opt: 438 Z-score: 220.9 bits: 48.6 E(85289): 1.4e-05
Smith-Waterman score: 447; 47.1% identity (59.2% similar) in 191 aa overlap (101-276:26-207)
80 90 100 110 120
pF1KB9 ASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRP-PQPEQP-PAQAKGPAH
: : :.: : : : : :.: ::
NP_061 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKG---
10 20 30 40 50
130 140 150 160 170
pF1KB9 GLHASHVLQPQPPPPLQPRAVP------PAAPRRCEAAPATPGV---PAGGSAPACPLLL
:. : : ::.: :: :. :.: : :. : :
NP_061 --FATSSYYP-PAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCA
60 70 80 90 100
180 190 200 210 220 230
pF1KB9 ADKSPLG----LKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFH
::: .: : . :: ::::.... . : : : .:.: .::: :.::::::::
NP_061 QDKSVFGETEEQKCSTPV-YPWMQRMN--SCNSSSFGPSGRRGRQTYTRYQTLELEKEFH
110 120 130 140 150 160
240 250 260 270 280 290
pF1KB9 FNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPG
.::::::::::::::.:::.:::.:::::::::::::. ::
NP_061 YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
170 180 190 200 210 220
300 310 320
pF1KB9 KAQTQSPHLHPHPHPSTSTPVPSSI
320 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:25:43 2016 done: Fri Nov 4 23:25:45 2016
Total Scan time: 7.200 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]