FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9667, 310 aa
  1>>>pF1KB9667 310 - 310 aa - 310 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3969+/-0.00102; mu= 5.7546+/- 0.059
 mean_var=220.9637+/-49.677, 0's: 0 Z-trim(111.3): 797  B-trim: 693 in 1/50
 Lambda= 0.086281
 statistics sampled from 11286 (12240) to 11286 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.376), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS3849.1 ZFP42 gene_id:132625|Hs108|chr4         ( 310) 2131 278.1 6.2e-75
CCDS9957.1 YY1 gene_id:7528|Hs108|chr14            ( 414)  942 130.2 2.7e-30
CCDS14202.1 YY2 gene_id:404281|Hs108|chrX          ( 372)  849 118.6 7.6e-27


>>CCDS3849.1 ZFP42 gene_id:132625|Hs108|chr4              (310 aa)
 initn: 2131 init1: 2131 opt: 2131  Z-score: 1458.8  bits: 278.1 E(32554): 6.2e-75
Smith-Waterman score: 2131; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KB9 MSQQLKKRAKTRHQKGLGGRAPSGAKPRQGKSSQDLQAEIEPVSAVWALCDGYVCYEPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MSQQLKKRAKTRHQKGLGGRAPSGAKPRQGKSSQDLQAEIEPVSAVWALCDGYVCYEPGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QALGGDDFSDCYIECVIRGEFSQPILEEDSLFESLEYLKKGSEQQLSQKVFEASSLECSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 QALGGDDFSDCYIECVIRGEFSQPILEEDSLFESLEYLKKGSEQQLSQKVFEASSLECSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EYMKKGVKKELPQKIVGENSLEYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARKKPPINK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 EYMKKGVKKELPQKIVGENSLEYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARKKPPINK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EYDSLSAIACPQSGCTRKLRNRAALRKHLLIHGPRDHVCAECGKAFVESSKLKRHFLVHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 EYDSLSAIACPQSGCTRKLRNRAALRKHLLIHGPRDHVCAECGKAFVESSKLKRHFLVHT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 GEKPFRCTFEGCGKRFSLDFNLRTHVRIHTGEKRFVCPFQGCNRRFIQSNNLKAHILTHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 GEKPFRCTFEGCGKRFSLDFNLRTHVRIHTGEKRFVCPFQGCNRRFIQSNNLKAHILTHA
              250       260       270       280       290       300

              310
pF1KB9 NTNKNEQEGK
       ::::::::::
CCDS38 NTNKNEQEGK
              310

>>CCDS9957.1 YY1 gene_id:7528|Hs108|chr14                 (414 aa)
 initn: 1169 init1: 904 opt: 942  Z-score: 657.5  bits: 130.2 E(32554): 2.7e-30
Smith-Waterman score: 942; 66.0% identity (84.0% similar) in 212 aa overlap (99-306:203-414)

       70        80        90       100       110        120       
pF1KB9 SDCYIECVIRGEFSQPILEEDSLFESLEYLKKGSEQQLSQKVFEAS-SLECSLEYMKKGV
                                     ::  ..:.. :..:.  :.       :: .
CCDS99 KKGGGKKSGKKSYLSGGAGAAGGGGADPGNKKWEQKQVQIKTLEGEFSVTMWSSDEKKDI
            180       190       200       210       220       230  

       130         140        150       160       170       180    
pF1KB9 KKE--LPQKIVGENSL-EYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARKKPPINKEYDS
        .:  . ..:.::::  .::::::::::::::::::::::::::::::: ::   :: :.
CCDS99 DHETVVEEQIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDA
            240       250       260       270       280       290  

          190       200       210       220       230       240    
pF1KB9 LSAIACPQSGCTRKLRNRAALRKHLLIHGPRDHVCAECGKAFVESSKLKRHFLVHTGEKP
         .::::..:::. .:. .:.::::  :::: ::::::::::::::::::: ::::::::
CCDS99 PRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP
            300       310       320       330       340       350  

          250       260       270       280       290       300    
pF1KB9 FRCTFEGCGKRFSLDFNLRTHVRIHTGEKRFVCPFQGCNRRFIQSNNLKAHILTHANTNK
       :.:::::::::::::::::::::::::.. .::::.:::..: ::.:::.::::::....
CCDS99 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN
            360       370       380       390       400       410  

          310
pF1KB9 NEQEGK
       :.    
CCDS99 NQ    
             

>>CCDS14202.1 YY2 gene_id:404281|Hs108|chrX               (372 aa)
 initn: 1051 init1: 633 opt: 849  Z-score: 595.4  bits: 118.6 E(32554): 7.6e-27
Smith-Waterman score: 849; 62.4% identity (80.7% similar) in 202 aa overlap (108-305:171-371)

        80        90       100       110       120       130       
pF1KB9 RGEFSQPILEEDSLFESLEYLKKGSEQQLSQKVFEASSLECSLEYMKKGVKKELPQKIVG
                                     :: .....::  .     . . .  :  ::
CCDS14 PSKKPSGKSATSTEANPAGSSSSLGTRKWEQKQMQVKTLEGEFSVTMWSPNDNNDQGAVG
              150       160       170       180       190       200

       140           150       160       170       180       190   
pF1KB9 ENSLE----YSEYMTGKKLPPGGIPGIDLSDPKQLAEFARKKPPINKEYDSLSAIACPQS
       :.. :    ::::. ::::::::.::::::::::::::.. ::  .:  .  ... :  :
CCDS14 EGQAENPPDYSEYLKGKKLPPGGLPGIDLSDPKQLAEFTKVKPKRSKG-EPPKTVPCSYS
              210       220       230       240        250         

           200       210       220       230       240       250   
pF1KB9 GCTRKLRNRAALRKHLLIHGPRDHVCAECGKAFVESSKLKRHFLVHTGEKPFRCTFEGCG
       :: . .:. ::.:::: ::::: ::::::::::.:::::.:: :::::::::.:::::::
CCDS14 GCEKMFRDYAAMRKHLHIHGPRVHVCAECGKAFLESSKLRRHQLVHTGEKPFQCTFEGCG
     260       270       280       290       300       310         

           260       270       280       290       300       310
pF1KB9 KRFSLDFNLRTHVRIHTGEKRFVCPFQGCNRRFIQSNNLKAHILTHANTNKNEQEGK
       ::::::::::::.:::::.: :::::. :::.: ::.:::.:::::..:..:     
CCDS14 KRFSLDFNLRTHLRIHTGDKPFVCPFDVCNRKFAQSTNLKTHILTHVKTKNNP    
     320       330       340       350       360       370      




310 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:05:08 2016 done: Fri Nov  4 18:05:08 2016
 Total Scan time:  2.810 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]