FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9662, 337 aa
  1>>>pF1KB9662 337 - 337 aa - 337 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6177+/-0.000318; mu= 12.0610+/- 0.020
 mean_var=155.6406+/-33.859, 0's: 0 Z-trim(120.2): 13  B-trim: 1691 in 1/56
 Lambda= 0.102805
 statistics sampled from 35100 (35113) to 35100 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.412), width:  16
 Scan time:  8.530

The best scores are:                                      opt bits E(85289)
NP_008909 (OMIM: 300951,300953) RING finger protei ( 343) 1440 225.0 1.8e-58


>>NP_008909 (OMIM: 300951,300953) RING finger protein 11  (343 aa)
 initn: 1707 init1: 1397 opt: 1440  Z-score: 1170.5  bits: 225.0 E(85289): 1.8e-58
Smith-Waterman score: 1675; 71.0% identity (85.2% similar) in 345 aa overlap (1-336:1-342)

               10        20        30        40        50        60
pF1KB9 MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPP
       ::   :::...:   ::::::::::::::::: ::::::::: :::.::.::: ::..: 
NP_008 MAEQLSPGKAVD---QVCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPE
               10           20        30        40        50       

                 70               80        90       100       110 
pF1KB9 --RVAPRPRGLHSW----QKAAHGD---RRGEEAAPESLDVVYRSTRSAKPVGPEDMGAT
         ::.  :   ..     ::::.::   .. ::  :::: :::.::::::::::::::::
NP_008 KKRVTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGAT
        60        70        80        90       100       110       

             120       130       140       150       160       170 
pF1KB9 ADFEQDTEKEHHTPTILKCSQRVQEALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGM
       : .: :::::. . .:.. ::..:: :::.: :.:::::..: .:.:::::::::.::::
NP_008 AVYELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGM
       120       130       140       150       160       170       

             180       190       200       210       220       230 
pF1KB9 ARKGPIRAPGHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELE
       .:::::::: :::::::::::::::::::::::::::::::::::::::: ::.:::::.
NP_008 VRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELD
       180       190       200       210       220       230       

             240       250       260       270       280       290 
pF1KB9 EGRYCICEDENHEVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCY
       :::: . ::::.::::..:::::.::::::.:::::::::::::::::::.:::.:::::
NP_008 EGRYGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCY
       240       250       260       270       280       290       

             300       310       320       330       
pF1KB9 ICDQPTGGIFNPAKELMAKLQKLQAAEGGGKSHFTEDPHECPIPMA
       .::: :.:.:::::::.:::.: .:.  :: : . ::: :  ::. 
NP_008 VCDQQTNGVFNPAKELIAKLEKHRATGEGGASDLPEDPDEDAIPIT
       300       310       320       330       340   




337 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:02:37 2016 done: Fri Nov  4 18:02:38 2016
 Total Scan time:  8.530 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]