FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9662, 337 aa
  1>>>pF1KB9662 337 - 337 aa - 337 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2825+/-0.000775; mu= 8.0862+/- 0.047
 mean_var=156.7031+/-32.913, 0's: 0 Z-trim(113.2): 24  B-trim: 0 in 0/53
 Lambda= 0.102456
 statistics sampled from 13868 (13878) to 13868 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.426), width:  16
 Scan time:  2.910

The best scores are:                                      opt bits E(32554)
CCDS9486.1 RNF113B gene_id:140432|Hs108|chr13      ( 322) 2280 348.4 4.7e-96
CCDS14589.1 RNF113A gene_id:7737|Hs108|chrX        ( 343) 1440 224.3 1.2e-58


>>CCDS9486.1 RNF113B gene_id:140432|Hs108|chr13           (322 aa)
 initn: 2280 init1: 2280 opt: 2280  Z-score: 1838.0  bits: 348.4 E(32554): 4.7e-96
Smith-Waterman score: 2280; 100.0% identity (100.0% similar) in 319 aa overlap (1-319:1-319)

               10        20        30        40        50        60
pF1KB9 MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RVAPRPRGLHSWQKAAHGDRRGEEAAPESLDVVYRSTRSAKPVGPEDMGATADFEQDTEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 RVAPRPRGLHSWQKAAHGDRRGEEAAPESLDVVYRSTRSAKPVGPEDMGATADFEQDTEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EHHTPTILKCSQRVQEALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGMARKGPIRAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 EHHTPTILKCSQRVQEALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGMARKGPIRAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELEEGRYCICED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 GHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELEEGRYCICED
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ENHEVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 ENHEVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGI
              250       260       270       280       290       300

              310       320       330       
pF1KB9 FNPAKELMAKLQKLQAAEGGGKSHFTEDPHECPIPMA
       :::::::::::::::::::                  
CCDS94 FNPAKELMAKLQKLQAAEGKKR               
              310       320                 

>>CCDS14589.1 RNF113A gene_id:7737|Hs108|chrX             (343 aa)
 initn: 1707 init1: 1397 opt: 1440  Z-score: 1166.6  bits: 224.3 E(32554): 1.2e-58
Smith-Waterman score: 1675; 71.0% identity (85.2% similar) in 345 aa overlap (1-336:1-342)

               10        20        30        40        50        60
pF1KB9 MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPP
       ::   :::...:   ::::::::::::::::: ::::::::: :::.::.::: ::..: 
CCDS14 MAEQLSPGKAVD---QVCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPE
               10           20        30        40        50       

                 70               80        90       100       110 
pF1KB9 --RVAPRPRGLHSW----QKAAHGD---RRGEEAAPESLDVVYRSTRSAKPVGPEDMGAT
         ::.  :   ..     ::::.::   .. ::  :::: :::.::::::::::::::::
CCDS14 KKRVTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGAT
        60        70        80        90       100       110       

             120       130       140       150       160       170 
pF1KB9 ADFEQDTEKEHHTPTILKCSQRVQEALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGM
       : .: :::::. . .:.. ::..:: :::.: :.:::::..: .:.:::::::::.::::
CCDS14 AVYELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGM
       120       130       140       150       160       170       

             180       190       200       210       220       230 
pF1KB9 ARKGPIRAPGHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELE
       .:::::::: :::::::::::::::::::::::::::::::::::::::: ::.:::::.
CCDS14 VRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELD
       180       190       200       210       220       230       

             240       250       260       270       280       290 
pF1KB9 EGRYCICEDENHEVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCY
       :::: . ::::.::::..:::::.::::::.:::::::::::::::::::.:::.:::::
CCDS14 EGRYGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCY
       240       250       260       270       280       290       

             300       310       320       330       
pF1KB9 ICDQPTGGIFNPAKELMAKLQKLQAAEGGGKSHFTEDPHECPIPMA
       .::: :.:.:::::::.:::.: .:.  :: : . ::: :  ::. 
CCDS14 VCDQQTNGVFNPAKELIAKLEKHRATGEGGASDLPEDPDEDAIPIT
       300       310       320       330       340   




337 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:02:36 2016 done: Fri Nov  4 18:02:36 2016
 Total Scan time:  2.910 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]