FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9661, 343 aa
  1>>>pF1KB9661 343 - 343 aa - 343 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3141+/-0.000803; mu= 8.1305+/- 0.048
 mean_var=147.4264+/-30.865, 0's: 0 Z-trim(112.1): 31  B-trim: 750 in 1/52
 Lambda= 0.105630
 statistics sampled from 12883 (12898) to 12883 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.396), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS14589.1 RNF113A gene_id:7737|Hs108|chrX        ( 343) 2392 375.8 2.9e-104
CCDS9486.1 RNF113B gene_id:140432|Hs108|chr13      ( 322) 1388 222.8 3.1e-58


>>CCDS14589.1 RNF113A gene_id:7737|Hs108|chrX             (343 aa)
 initn: 2392 init1: 2392 opt: 2392  Z-score: 1985.4  bits: 375.8 E(32554): 2.9e-104
Smith-Waterman score: 2392; 100.0% identity (100.0% similar) in 343 aa overlap (1-343:1-343)

               10        20        30        40        50        60
pF1KB9 MAEQLSPGKAVDQVCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAEQLSPGKAVDQVCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCD
              250       260       270       280       290       300

              310       320       330       340   
pF1KB9 QQTNGVFNPAKELIAKLEKHRATGEGGASDLPEDPDEDAIPIT
       :::::::::::::::::::::::::::::::::::::::::::
CCDS14 QQTNGVFNPAKELIAKLEKHRATGEGGASDLPEDPDEDAIPIT
              310       320       330       340   

>>CCDS9486.1 RNF113B gene_id:140432|Hs108|chr13           (322 aa)
 initn: 1653 init1: 1343 opt: 1388  Z-score: 1158.9  bits: 222.8 E(32554): 3.1e-58
Smith-Waterman score: 1623; 72.3% identity (86.6% similar) in 329 aa overlap (1-326:1-319)

               10           20        30        40        50       
pF1KB9 MAEQLSPGKAVDQ---VCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPE
       ::   :::...::   :::::::::::::::: ::::::::: :::.::.::: ::..: 
CCDS94 MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPP
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB9 KKRVTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGAT
         ::.  :   ..     ::::.::   .. ::  :::: :::.::::::::::::::::
CCDS94 --RVAPRPRGLHSW----QKAAHGD---RRGEEAAPESLDVVYRSTRSAKPVGPEDMGAT
                 70               80        90       100       110 

       120       130       140       150       160       170       
pF1KB9 AVYELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGM
       : .: :::::. . .:.. ::..:: :::.: :.:::::..: .:.:::::::::.::::
CCDS94 ADFEQDTEKEHHTPTILKCSQRVQEALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGM
             120       130       140       150       160       170 

       180       190       200       210       220       230       
pF1KB9 VRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELD
       .:::::::: :::::::::::::::::::::::::::::::::::::::: ::.:::::.
CCDS94 ARKGPIRAPGHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELE
             180       190       200       210       220       230 

       240       250       260       270       280       290       
pF1KB9 EGRYGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCY
       :::: . ::::.::::..:::::.::::::.:::::::::::::::::::.:::.:::::
CCDS94 EGRYCICEDENHEVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCY
             240       250       260       270       280       290 

       300       310       320       330       340   
pF1KB9 VCDQQTNGVFNPAKELIAKLEKHRATGEGGASDLPEDPDEDAIPIT
       .::: :.:.:::::::.:::.: .:. ::                 
CCDS94 ICDQPTGGIFNPAKELMAKLQKLQAA-EGKKR              
             300       310        320                




343 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:01:54 2016 done: Fri Nov  4 18:01:55 2016
 Total Scan time:  2.400 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]