Result of FASTA (omim) for
pF1KB9658
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9658, 323 aa
1>>>pF1KB9658 323 - 323 aa - 323 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9977+/-0.000318; mu= 2.0816+/- 0.020
mean_var=243.0165+/-50.420, 0's: 0 Z-trim(124.6): 35 B-trim: 1521 in 1/58
Lambda= 0.082273
statistics sampled from 46463 (46516) to 46463 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.545), width: 16
Scan time: 9.230
The best scores are: opt bits E(85289)
NP_005452 (OMIM: 166300,608968,617041) transcripti ( 323) 2239 277.7 2.2e-74
NP_001026974 (OMIM: 177075,601088,610202) transcri ( 373) 707 95.9 1.4e-19
XP_016878722 (OMIM: 177075,601088,610202) PREDICTE ( 383) 707 95.9 1.4e-19
XP_016878724 (OMIM: 177075,601088,610202) PREDICTE ( 383) 707 95.9 1.4e-19
XP_016878723 (OMIM: 177075,601088,610202) PREDICTE ( 383) 707 95.9 1.4e-19
NP_005351 (OMIM: 177075,601088,610202) transcripti ( 403) 706 95.8 1.6e-19
NP_963883 (OMIM: 610303) transcription factor MafA ( 353) 581 81.0 4.1e-15
XP_011535108 (OMIM: 162080,613750) PREDICTED: neur ( 234) 442 64.3 2.8e-10
NP_006168 (OMIM: 162080,613750) neural retina-spec ( 237) 439 64.0 3.7e-10
XP_005267766 (OMIM: 162080,613750) PREDICTED: neur ( 237) 439 64.0 3.7e-10
XP_011535104 (OMIM: 162080,613750) PREDICTED: neur ( 237) 439 64.0 3.7e-10
XP_011535107 (OMIM: 162080,613750) PREDICTED: neur ( 237) 439 64.0 3.7e-10
XP_011535106 (OMIM: 162080,613750) PREDICTED: neur ( 237) 439 64.0 3.7e-10
XP_005267765 (OMIM: 162080,613750) PREDICTED: neur ( 237) 439 64.0 3.7e-10
XP_005267767 (OMIM: 162080,613750) PREDICTED: neur ( 237) 439 64.0 3.7e-10
XP_011535103 (OMIM: 162080,613750) PREDICTED: neur ( 339) 439 64.1 4.8e-10
XP_016876839 (OMIM: 162080,613750) PREDICTED: neur ( 132) 423 61.8 8.9e-10
XP_005249908 (OMIM: 600197) PREDICTED: transcripti ( 156) 380 56.8 3.4e-08
NP_002351 (OMIM: 600197) transcription factor MafK ( 156) 380 56.8 3.4e-08
XP_006715836 (OMIM: 600197) PREDICTED: transcripti ( 156) 380 56.8 3.4e-08
NP_116100 (OMIM: 602020) transcription factor MafG ( 162) 368 55.4 9.5e-08
NP_002350 (OMIM: 602020) transcription factor MafG ( 162) 368 55.4 9.5e-08
XP_011521880 (OMIM: 602020) PREDICTED: transcripti ( 162) 368 55.4 9.5e-08
NP_001155044 (OMIM: 604877) transcription factor M ( 164) 344 52.5 6.9e-07
NP_001155045 (OMIM: 604877) transcription factor M ( 164) 344 52.5 6.9e-07
NP_036455 (OMIM: 604877) transcription factor MafF ( 164) 344 52.5 6.9e-07
NP_001155046 (OMIM: 604877) transcription factor M ( 135) 324 50.1 3.1e-06
>>NP_005452 (OMIM: 166300,608968,617041) transcription f (323 aa)
initn: 2239 init1: 2239 opt: 2239 Z-score: 1456.3 bits: 277.7 E(85289): 2.2e-74
Smith-Waterman score: 2239; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)
10 20 30 40 50 60
pF1KB9 MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 STPCSSVPSSPSFSPTEQKTHLEDLYWMASNYQQMNPEALNLTPEDAVEALIGSHPVPQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 STPCSSVPSSPSFSPTEQKTHLEDLYWMASNYQQMNPEALNLTPEDAVEALIGSHPVPQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LQSFDSFRGAHHHHHHHHPHPHHAYPGAGVAHDELGPHAHPHHHHHHQASPPPSSAASPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LQSFDSFRGAHHHHHHHHPHPHHAYPGAGVAHDELGPHAHPHHHHHHQASPPPSSAASPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 QQLPTSHPGPGPHATASATAAGGNGSVEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QQLPTSHPGPGPHATASATAAGGNGSVEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 QKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEK
250 260 270 280 290 300
310 320
pF1KB9 LANSGFREAGSTSDSPSSPEFFL
:::::::::::::::::::::::
NP_005 LANSGFREAGSTSDSPSSPEFFL
310 320
>>NP_001026974 (OMIM: 177075,601088,610202) transcriptio (373 aa)
initn: 1072 init1: 642 opt: 707 Z-score: 472.7 bits: 95.9 E(85289): 1.4e-19
Smith-Waterman score: 1060; 52.6% identity (70.2% similar) in 359 aa overlap (18-323:19-373)
10 20 30 40 50
pF1KB9 MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTP
:::::::::.::.:::::. ...: : :: .::.::::
NP_001 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPV-ETDRIISQCGRLIAGGSLSSTP
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 LSTPCSSVPSSPSFS-PT-----EQKTHLEDLYWMASNYQQMNPEALNLTPEDAVEALIG
.:::::::: ::::: :. :::.:::: :::.. ::.:::::...:::::::::.
NP_001 MSTPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALIS
60 70 80 90 100 110
120 130 140 150
pF1KB9 -SHPVPQPLQSFDSF-RGAHHHHHHHHPHPHHAYPGAG-----------------VAHDE
:: : .::.. :::.. . :.: .:..
NP_001 NSH---QLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSG
120 130 140 150 160 170
160 170 180 190 200
pF1KB9 LGPHAHPHHHH-----HHQASPPPSSAASPAQQLP-TSHPGPGPHATASATAAGGNGS--
::: : :::: :: .. :..:.: : . .. : : :.:.. ..::.:.
NP_001 AGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGG
180 190 200 210 220 230
210 220 230 240
pF1KB9 --------------------VEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTL
.:::::.:::.::::::::.::: .:.::::::::::::
NP_001 GGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTL
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB9 KNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEKLANSGF
::::::::::.:::::.: ::.::.::.:::..::::.:::.::::::: : :::..:::
NP_001 KNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGF
300 310 320 330 340 350
310 320
pF1KB9 REAGSTSDSPSSPEFFL
:: ::.::.:::::::.
NP_001 RENGSSSDNPSSPEFFM
360 370
>>XP_016878722 (OMIM: 177075,601088,610202) PREDICTED: t (383 aa)
initn: 1072 init1: 642 opt: 707 Z-score: 472.6 bits: 95.9 E(85289): 1.4e-19
Smith-Waterman score: 1060; 52.6% identity (70.2% similar) in 359 aa overlap (18-323:19-373)
10 20 30 40 50
pF1KB9 MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTP
:::::::::.::.:::::. ...: : :: .::.::::
XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPV-ETDRIISQCGRLIAGGSLSSTP
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 LSTPCSSVPSSPSFS-PT-----EQKTHLEDLYWMASNYQQMNPEALNLTPEDAVEALIG
.:::::::: ::::: :. :::.:::: :::.. ::.:::::...:::::::::.
XP_016 MSTPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALIS
60 70 80 90 100 110
120 130 140 150
pF1KB9 -SHPVPQPLQSFDSF-RGAHHHHHHHHPHPHHAYPGAG-----------------VAHDE
:: : .::.. :::.. . :.: .:..
XP_016 NSH---QLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSG
120 130 140 150 160 170
160 170 180 190 200
pF1KB9 LGPHAHPHHHH-----HHQASPPPSSAASPAQQLP-TSHPGPGPHATASATAAGGNGS--
::: : :::: :: .. :..:.: : . .. : : :.:.. ..::.:.
XP_016 AGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGG
180 190 200 210 220 230
210 220 230 240
pF1KB9 --------------------VEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTL
.:::::.:::.::::::::.::: .:.::::::::::::
XP_016 GGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTL
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB9 KNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEKLANSGF
::::::::::.:::::.: ::.::.::.:::..::::.:::.::::::: : :::..:::
XP_016 KNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGF
300 310 320 330 340 350
310 320
pF1KB9 REAGSTSDSPSSPEFFL
:: ::.::.:::::::.
XP_016 RENGSSSDNPSSPEFFMYPRESSTSVM
360 370 380
>>XP_016878724 (OMIM: 177075,601088,610202) PREDICTED: t (383 aa)
initn: 1072 init1: 642 opt: 707 Z-score: 472.6 bits: 95.9 E(85289): 1.4e-19
Smith-Waterman score: 1060; 52.6% identity (70.2% similar) in 359 aa overlap (18-323:19-373)
10 20 30 40 50
pF1KB9 MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTP
:::::::::.::.:::::. ...: : :: .::.::::
XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPV-ETDRIISQCGRLIAGGSLSSTP
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 LSTPCSSVPSSPSFS-PT-----EQKTHLEDLYWMASNYQQMNPEALNLTPEDAVEALIG
.:::::::: ::::: :. :::.:::: :::.. ::.:::::...:::::::::.
XP_016 MSTPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALIS
60 70 80 90 100 110
120 130 140 150
pF1KB9 -SHPVPQPLQSFDSF-RGAHHHHHHHHPHPHHAYPGAG-----------------VAHDE
:: : .::.. :::.. . :.: .:..
XP_016 NSH---QLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSG
120 130 140 150 160 170
160 170 180 190 200
pF1KB9 LGPHAHPHHHH-----HHQASPPPSSAASPAQQLP-TSHPGPGPHATASATAAGGNGS--
::: : :::: :: .. :..:.: : . .. : : :.:.. ..::.:.
XP_016 AGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGG
180 190 200 210 220 230
210 220 230 240
pF1KB9 --------------------VEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTL
.:::::.:::.::::::::.::: .:.::::::::::::
XP_016 GGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTL
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB9 KNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEKLANSGF
::::::::::.:::::.: ::.::.::.:::..::::.:::.::::::: : :::..:::
XP_016 KNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGF
300 310 320 330 340 350
310 320
pF1KB9 REAGSTSDSPSSPEFFL
:: ::.::.:::::::.
XP_016 RENGSSSDNPSSPEFFMYPRESSTSVM
360 370 380
>>XP_016878723 (OMIM: 177075,601088,610202) PREDICTED: t (383 aa)
initn: 1072 init1: 642 opt: 707 Z-score: 472.6 bits: 95.9 E(85289): 1.4e-19
Smith-Waterman score: 1060; 52.6% identity (70.2% similar) in 359 aa overlap (18-323:19-373)
10 20 30 40 50
pF1KB9 MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTP
:::::::::.::.:::::. ...: : :: .::.::::
XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPV-ETDRIISQCGRLIAGGSLSSTP
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 LSTPCSSVPSSPSFS-PT-----EQKTHLEDLYWMASNYQQMNPEALNLTPEDAVEALIG
.:::::::: ::::: :. :::.:::: :::.. ::.:::::...:::::::::.
XP_016 MSTPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALIS
60 70 80 90 100 110
120 130 140 150
pF1KB9 -SHPVPQPLQSFDSF-RGAHHHHHHHHPHPHHAYPGAG-----------------VAHDE
:: : .::.. :::.. . :.: .:..
XP_016 NSH---QLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSG
120 130 140 150 160 170
160 170 180 190 200
pF1KB9 LGPHAHPHHHH-----HHQASPPPSSAASPAQQLP-TSHPGPGPHATASATAAGGNGS--
::: : :::: :: .. :..:.: : . .. : : :.:.. ..::.:.
XP_016 AGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGG
180 190 200 210 220 230
210 220 230 240
pF1KB9 --------------------VEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTL
.:::::.:::.::::::::.::: .:.::::::::::::
XP_016 GGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTL
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB9 KNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEKLANSGF
::::::::::.:::::.: ::.::.::.:::..::::.:::.::::::: : :::..:::
XP_016 KNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGF
300 310 320 330 340 350
310 320
pF1KB9 REAGSTSDSPSSPEFFL
:: ::.::.:::::::.
XP_016 RENGSSSDNPSSPEFFMYPRESSTSVM
360 370 380
>>NP_005351 (OMIM: 177075,601088,610202) transcription f (403 aa)
initn: 1071 init1: 641 opt: 706 Z-score: 471.7 bits: 95.8 E(85289): 1.6e-19
Smith-Waterman score: 1059; 52.6% identity (70.2% similar) in 359 aa overlap (18-323:19-373)
10 20 30 40 50
pF1KB9 MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTP
:::::::::.::.:::::. ...: : :: .::.::::
NP_005 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPV-ETDRIISQCGRLIAGGSLSSTP
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 LSTPCSSVPSSPSFS-PT-----EQKTHLEDLYWMASNYQQMNPEALNLTPEDAVEALIG
.:::::::: ::::: :. :::.:::: :::.. ::.:::::...:::::::::.
NP_005 MSTPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALIS
60 70 80 90 100 110
120 130 140 150
pF1KB9 -SHPVPQPLQSFDSF-RGAHHHHHHHHPHPHHAYPGAG-----------------VAHDE
:: : .::.. :::.. . :.: .:..
NP_005 NSH---QLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSG
120 130 140 150 160 170
160 170 180 190 200
pF1KB9 LGPHAHPHHHH-----HHQASPPPSSAASPAQQLP-TSHPGPGPHATASATAAGGNGS--
::: : :::: :: .. :..:.: : . .. : : :.:.. ..::.:.
NP_005 AGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGG
180 190 200 210 220 230
210 220 230 240
pF1KB9 --------------------VEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTL
.:::::.:::.::::::::.::: .:.::::::::::::
NP_005 GGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTL
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB9 KNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEKLANSGF
::::::::::.:::::.: ::.::.::.:::..::::.:::.::::::: : :::..:::
NP_005 KNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGF
300 310 320 330 340 350
310 320
pF1KB9 REAGSTSDSPSSPEFFL
:: ::.::.:::::::.
NP_005 RENGSSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
360 370 380 390 400
>>NP_963883 (OMIM: 610303) transcription factor MafA [Ho (353 aa)
initn: 931 init1: 510 opt: 581 Z-score: 392.2 bits: 81.0 E(85289): 4.1e-15
Smith-Waterman score: 995; 53.4% identity (64.0% similar) in 367 aa overlap (1-319:1-335)
10 20 30 40 50 60
pF1KB9 MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTPL
:::::.:: :::.::::.::::::::.::.::::: .::: : :: : ::.:::::
NP_963 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEP-PEAER---FCHRLPP-GSLSSTPL
10 20 30 40 50
70 80
pF1KB9 STPCSSVPSSPSF---SP---------------------------------TEQKTHLED
::::::::::::: :: : : :::
NP_963 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
60 70 80 90 100 110
90 100 110 120 130 140
pF1KB9 LYWMASNYQQMNPEALNLTPEDAVEALIGSHPVPQPLQSFDSFRGAHHHHHH--HHPHPH
::::.. ...::::::::::::::::::: .:: :: :::
NP_963 LYWMSGYQHHLNPEALNLTPEDAVEALIGS---------------GHHGAHHGAHHPAAA
120 130 140 150 160
150 160 170 180 190
pF1KB9 HAY-----PG--AGVAHDELGP-HAHPHHH--HHHQASPPPSSAASPAQQLPTSHPGPGP
:: :: .: . :..: : : :: :::.: : .. : : :
NP_963 AAYEAFRGPGFAGGGGADDMGAGHHHGAHHAAHHHHA-------AHHHHHHHHHHGGAG-
170 180 190 200 210
200 210 220 230 240 250
pF1KB9 HATASATAAGGNGSVEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYA
:. .:: . .:.:::::::::::::::::.::::.:.::::::::::::::::::
NP_963 HGG----GAGHHVRLEERFSDDQLVSMSVRELNRQLRGFSKEEVIRLKQKRRTLKNRGYA
220 230 240 250 260
260 270 280 290 300 310
pF1KB9 QSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEKLANSGFREAGST
::::.:::::.: ::.:: :: .:::::: ::.:::.::: :: : ::::. : ...
NP_963 QSCRFKRVQQRHILESEKCQLQSQVEQLKLEVGRLAKERDLYKEKYEKLAGRGGPGSAGG
270 280 290 300 310 320
320
pF1KB9 SDSPSSPEFFL
. : :
NP_963 AGFPREPSPPQAGPGGAKGTADFFL
330 340 350
>>XP_011535108 (OMIM: 162080,613750) PREDICTED: neural r (234 aa)
initn: 530 init1: 423 opt: 442 Z-score: 305.4 bits: 64.3 E(85289): 2.8e-10
Smith-Waterman score: 442; 45.0% identity (67.8% similar) in 180 aa overlap (128-305:52-223)
100 110 120 130 140 150
pF1KB9 EALNLTPEDAVEALIGSHPVPQPLQSFDSFRGAHHHHHHHHPHPHHAYPGA-GVAHDELG
::: : .: : : . :... .
XP_011 RDRAVRGERGREGEVQAETRSTGRLPSQETRGAGGWTHSSRPCPPPPRMGNLAEAESRRA
30 40 50 60 70 80
160 170 180 190 200 210
pF1KB9 PHAHPHHHHHHQASPPPSSAASPAQQLPTSHPGPGPHATASATAAG-GNGSVEDRFSDDQ
: : :. . .... :: : . :: :.: : .. . . .::::
XP_011 PLAAPRGRAQRKVH---SSQPSSRMALP-----PSPLAMEYVNDFDLMKFELAERFSDAA
90 100 110 120 130
220 230 240 250 260 270
pF1KB9 LVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ
:::::::::::.::: .::..::::.:::::::::::.:: ::.::.. :: :...:
XP_011 LVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAA
140 150 160 170 180 190
280 290 300 310 320
pF1KB9 QVEQLKQEVSRLARERDAYKVKCEKLANSGFREAGSTSDSPSSPEFFL
:.. :. ::.::::::: ::..:..:..::
XP_011 QLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
200 210 220 230
>>NP_006168 (OMIM: 162080,613750) neural retina-specific (237 aa)
initn: 782 init1: 423 opt: 439 Z-score: 303.4 bits: 64.0 E(85289): 3.7e-10
Smith-Waterman score: 634; 43.9% identity (59.1% similar) in 303 aa overlap (11-305:3-226)
10 20 30 40 50 60
pF1KB9 MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTPL
:: :::::::::::::.::.::.:: ::: : . : ::
NP_006 MALPPSPLAMEYVNDFDLMKFEVKREP--SEGRPGPPTASL---GS------
10 20 30 40
70 80 90 100 110
pF1KB9 STPCSSVPSSPSFS-P-----TE-QKTHLEDLYWMASNYQQMNP-EALNLTPEDAVEALI
:: :::: ::.:: : :: . ::.:::.:. ::.. :::.:.::.:.: :
NP_006 -TPYSSVPPSPTFSEPGMVGATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQ
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB9 GSHPVPQPLQSFDSFRGAHHHHHHHHPHPHHAYPGAGVAHDELGPHAHPHHHHHHQASPP
:. ::: :. :: :::. :
NP_006 GQGPVP-----VDG--------------PHGYYPGS-----------------------P
110
180 190 200 210 220 230
pF1KB9 PSSAASPAQQLPTSHPGPGPHATASATAAGGNGSVEDRFSDDQLVSMSVRELNRHLRGFT
..:. .: . .:::: :::::::::::.:::
NP_006 EETGAQHVQ-------------------------LAERFSDAALVSMSVRELNRQLRGCG
120 130 140 150
240 250 260 270 280 290
pF1KB9 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERD
.::..::::.:::::::::::.:: ::.::.. :: :...: :.. :. ::.:::::::
NP_006 RDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERD
160 170 180 190 200 210
300 310 320
pF1KB9 AYKVKCEKLANSGFREAGSTSDSPSSPEFFL
::..:..:..::
NP_006 LYKARCDRLTSSGPGSGDPSHLFL
220 230
>>XP_005267766 (OMIM: 162080,613750) PREDICTED: neural r (237 aa)
initn: 782 init1: 423 opt: 439 Z-score: 303.4 bits: 64.0 E(85289): 3.7e-10
Smith-Waterman score: 634; 43.9% identity (59.1% similar) in 303 aa overlap (11-305:3-226)
10 20 30 40 50 60
pF1KB9 MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTPL
:: :::::::::::::.::.::.:: ::: : . : ::
XP_005 MALPPSPLAMEYVNDFDLMKFEVKREP--SEGRPGPPTASL---GS------
10 20 30 40
70 80 90 100 110
pF1KB9 STPCSSVPSSPSFS-P-----TE-QKTHLEDLYWMASNYQQMNP-EALNLTPEDAVEALI
:: :::: ::.:: : :: . ::.:::.:. ::.. :::.:.::.:.: :
XP_005 -TPYSSVPPSPTFSEPGMVGATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQ
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB9 GSHPVPQPLQSFDSFRGAHHHHHHHHPHPHHAYPGAGVAHDELGPHAHPHHHHHHQASPP
:. ::: :. :: :::. :
XP_005 GQGPVP-----VDG--------------PHGYYPGS-----------------------P
110
180 190 200 210 220 230
pF1KB9 PSSAASPAQQLPTSHPGPGPHATASATAAGGNGSVEDRFSDDQLVSMSVRELNRHLRGFT
..:. .: . .:::: :::::::::::.:::
XP_005 EETGAQHVQ-------------------------LAERFSDAALVSMSVRELNRQLRGCG
120 130 140 150
240 250 260 270 280 290
pF1KB9 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERD
.::..::::.:::::::::::.:: ::.::.. :: :...: :.. :. ::.:::::::
XP_005 RDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERD
160 170 180 190 200 210
300 310 320
pF1KB9 AYKVKCEKLANSGFREAGSTSDSPSSPEFFL
::..:..:..::
XP_005 LYKARCDRLTSSGPGSGDPSHLFL
220 230
323 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:00:23 2016 done: Fri Nov 4 18:00:25 2016
Total Scan time: 9.230 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]