FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9656, 159 aa
  1>>>pF1KB9656 159 - 159 aa - 159 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7935+/-0.000258; mu= 1.9741+/- 0.016
 mean_var=143.8341+/-28.395, 0's: 0 Z-trim(125.0): 5  B-trim: 46 in 1/56
 Lambda= 0.106941
 statistics sampled from 47661 (47666) to 47661 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.863), E-opt: 0.2 (0.559), width:  16
 Scan time:  6.590

The best scores are:                                      opt bits E(85289)
NP_001006640 (OMIM: 300237) transcription elongati ( 159) 1092 178.4 4.3e-45
NP_001006641 (OMIM: 300237) transcription elongati ( 159) 1092 178.4 4.3e-45
NP_004771 (OMIM: 300237) transcription elongation  ( 159) 1092 178.4 4.3e-45


>>NP_001006640 (OMIM: 300237) transcription elongation f  (159 aa)
 initn: 1092 init1: 1092 opt: 1092  Z-score: 930.5  bits: 178.4 E(85289): 4.3e-45
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB9 MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSSEEEFFPEELLPELLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSSEEEFFPEELLPELLPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 MLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGR
               70        80        90       100       110       120

              130       140       150         
pF1KB9 NLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI
       :::::::::::::::::::::::::::::::::::::::
NP_001 NLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI
              130       140       150         

>>NP_001006641 (OMIM: 300237) transcription elongation f  (159 aa)
 initn: 1092 init1: 1092 opt: 1092  Z-score: 930.5  bits: 178.4 E(85289): 4.3e-45
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB9 MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSSEEEFFPEELLPELLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSSEEEFFPEELLPELLPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 MLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGR
               70        80        90       100       110       120

              130       140       150         
pF1KB9 NLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI
       :::::::::::::::::::::::::::::::::::::::
NP_001 NLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI
              130       140       150         

>>NP_004771 (OMIM: 300237) transcription elongation fact  (159 aa)
 initn: 1092 init1: 1092 opt: 1092  Z-score: 930.5  bits: 178.4 E(85289): 4.3e-45
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB9 MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSSEEEFFPEELLPELLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSSEEEFFPEELLPELLPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 MLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGR
               70        80        90       100       110       120

              130       140       150         
pF1KB9 NLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI
       :::::::::::::::::::::::::::::::::::::::
NP_004 NLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI
              130       140       150         




159 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:59:47 2016 done: Fri Nov  4 17:59:48 2016
 Total Scan time:  6.590 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]