Result of FASTA (ccds) for
pF1KB9643
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9643, 407 aa
1>>>pF1KB9643 407 - 407 aa - 407 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3585+/-0.000928; mu= 13.8013+/- 0.056
mean_var=136.8991+/-28.539, 0's: 0 Z-trim(109.4): 121 B-trim: 85 in 1/53
Lambda= 0.109616
statistics sampled from 10699 (10843) to 10699 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.333), width: 16
Scan time: 2.590
The best scores are: opt bits E(32554)
CCDS9423.1 TRIM13 gene_id:10206|Hs108|chr13 ( 407) 2752 446.7 1.8e-125
CCDS41888.1 TRIM13 gene_id:10206|Hs108|chr13 ( 410) 2752 446.7 1.8e-125
CCDS3190.1 TRIM59 gene_id:286827|Hs108|chr3 ( 403) 724 126.0 6.2e-29
CCDS31356.1 TRIM68 gene_id:55128|Hs108|chr11 ( 485) 357 68.1 2.1e-11
>>CCDS9423.1 TRIM13 gene_id:10206|Hs108|chr13 (407 aa)
initn: 2752 init1: 2752 opt: 2752 Z-score: 2366.2 bits: 446.7 E(32554): 1.8e-125
Smith-Waterman score: 2752; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)
10 20 30 40 50 60
pF1KB9 MELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TSATGINSLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLICGICATR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 TSATGINSLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLICGICATR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GEHTKHVFCSIEDAYAQERDAFESLFQSFETWRRGDALSRLDTLETSKRKSLQLLTKDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 GEHTKHVFCSIEDAYAQERDAFESLFQSFETWRRGDALSRLDTLETSKRKSLQLLTKDSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQEQRMAFNIAEAFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 KVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQEQRMAFNIAEAFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DVSEPIVFLQQMQEFREKIKVIKETPLPPSNLPASPLMKNFDTSQWEDIKLVDVDKLSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 DVSEPIVFLQQMQEFREKIKVIKETPLPPSNLPASPLMKNFDTSQWEDIKLVDVDKLSLP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 QDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLFDDLATWKGCLSNFSSYLTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 QDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLFDDLATWKGCLSNFSSYLTK
310 320 330 340 350 360
370 380 390 400
pF1KB9 TADFIEQSVFYWEQVTDGFFIFNERFKNFTLVVLNNVAEFVCKYKLL
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 TADFIEQSVFYWEQVTDGFFIFNERFKNFTLVVLNNVAEFVCKYKLL
370 380 390 400
>>CCDS41888.1 TRIM13 gene_id:10206|Hs108|chr13 (410 aa)
initn: 2752 init1: 2752 opt: 2752 Z-score: 2366.1 bits: 446.7 E(32554): 1.8e-125
Smith-Waterman score: 2752; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:4-410)
10 20 30 40 50
pF1KB9 MELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MDVMELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 RKETSATGINSLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLICGIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RKETSATGINSLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLICGIC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 ATRGEHTKHVFCSIEDAYAQERDAFESLFQSFETWRRGDALSRLDTLETSKRKSLQLLTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ATRGEHTKHVFCSIEDAYAQERDAFESLFQSFETWRRGDALSRLDTLETSKRKSLQLLTK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 DSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQEQRMAFNIAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQEQRMAFNIAE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 AFKDVSEPIVFLQQMQEFREKIKVIKETPLPPSNLPASPLMKNFDTSQWEDIKLVDVDKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AFKDVSEPIVFLQQMQEFREKIKVIKETPLPPSNLPASPLMKNFDTSQWEDIKLVDVDKL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 SLPQDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLFDDLATWKGCLSNFSSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SLPQDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLFDDLATWKGCLSNFSSY
310 320 330 340 350 360
360 370 380 390 400
pF1KB9 LTKTADFIEQSVFYWEQVTDGFFIFNERFKNFTLVVLNNVAEFVCKYKLL
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LTKTADFIEQSVFYWEQVTDGFFIFNERFKNFTLVVLNNVAEFVCKYKLL
370 380 390 400 410
>>CCDS3190.1 TRIM59 gene_id:286827|Hs108|chr3 (403 aa)
initn: 640 init1: 244 opt: 724 Z-score: 633.0 bits: 126.0 E(32554): 6.2e-29
Smith-Waterman score: 724; 34.3% identity (70.6% similar) in 306 aa overlap (1-301:1-304)
10 20 30 40 50
pF1KB9 MELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRP--APFKCPTCR
:. .::.:::::: :.:.:::::::::.::..:::.::..: .::: :.:::.::
CCDS31 MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 K--ETSATGINSLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLICGI
. : . :::.:: ::..:..:.:::.. . : . .: : ::::..:: : .:.::
CCDS31 SITEIAPTGIESLPVNFALRAIIEKYQQ-EDHPDIVTCPEHYRQPLNVYCLLDKKLVCGH
70 80 90 100 110
120 130 140 150 160 170
pF1KB9 CATRGEHTKHVFCSIEDAYAQERDAFESLFQSFETWRRGDALSRLDTLETSKRKSLQLLT
: : :.: : . ....:: .:.:. ..:.... . : .. :. .: .: ...
CCDS31 CLTIGQHHGHPIDDLQSAYLKEKDTPQKLLEQLTDTHWTDLTHLIEKLKEQKSHSEKMIQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 KDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQEQRMAFNIA
:.. : ..:..:. ::.:::. .:. . . . : : :.:.... : ..: . ..
CCDS31 GDKEAVLQYFKELNDTLEQKKKSFLTALCDVGNLINQEYTPQIERMKEIREQQLELMALT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB9 EAFKDVSEPIVFLQQMQEFREKIKVIKETPLPPSN-LPASPLMKNFDTSQWEDIKLVDVD
.... : :. ::..... :......:. ::: . . : .... .: .. ..
CCDS31 ISLQEES-PLKFLEKVDDVRQHVQILKQRPLPEVQPVEIYPRVSKILKEEWSRTEIGQIK
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB9 KLSLPQDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLFDDLATWKGCLSNFS
.. .:.
CCDS31 NVLIPKMKISPKRMSCSWPGKDEKEVEFLKILNIVVVTLISVILMSILFFNQHIITFLSE
300 310 320 330 340 350
>>CCDS31356.1 TRIM68 gene_id:55128|Hs108|chr11 (485 aa)
initn: 210 init1: 126 opt: 357 Z-score: 318.3 bits: 68.1 E(32554): 2.1e-11
Smith-Waterman score: 357; 26.5% identity (57.2% similar) in 283 aa overlap (1-270:7-282)
10 20 30 40 50
pF1KB9 MELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKC
.: . :...:::: ... .: . :.:.::..:: :. : ... : . :
CCDS31 MDPTALVEAIVEEVACPICMTFLREPMSIDCGHSFCHSCLSGLWEIPGESQNW---GYTC
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 PTCRKETSATGINSLQVNYSLKGIVEKYNKIKISPKM----PVCKGHLGQPLNIFCLTDM
: :: .. .:. :..: ..::: ... : : .:. : :. :..:: :.
CCDS31 PLCRAPVQPR---NLRPNWQLANVVEKVRLLRLHPGMGLKGDLCERH-GEKLKMFCKEDV
60 70 80 90 100 110
120 130 140 150 160
pF1KB9 QLICGICATRGEHTKHVFCSIEDA---YAQE-RDAFESLFQ-SFETWR-RGDALSRLDTL
..: :. :: : .::. : : ..:.: : . . :.:. . .: :
CCDS31 LIMCEACSQSPEHEAHSVVPMEDVAWEYKWELHEALEHLKKEQEEAWKLEVGERKRTATW
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB9 ETSKRKSLQLLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDP-EINKLN
. . . : .. . .: ....:: : : :. . . ... . .... :.:. .
CCDS31 KIQVETRKQSIVWEFEKYQRLLEKKQPPHRQLGAEVAAALASLQREAAETMQKLELNHSE
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB9 TILQEQRMAFNIAEAFKDVSEPIVF-LQQMQEFREKIKVIK-ETPLPPSNLPASPLMKNF
: : : . ::: . ..:. . ::..:: .. : . . : : :
CCDS31 LIQQSQVLWRMIAELKERSQRPVRWMLQDIQEVLNRSKSWSLQQPEPISLELKTDCRVLG
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB9 DTSQWEDIKLVDVDKLSLPQDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLF
CCDS31 LREILKTYAADVRLDPDTAYSRLIVSEDRKRVHYGDTNQKLPDNPERFYRYNIVLGSQCI
300 310 320 330 340 350
407 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:25:37 2016 done: Sat Nov 5 08:25:37 2016
Total Scan time: 2.590 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]