FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9635, 323 aa
  1>>>pF1KB9635 323 - 323 aa - 323 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7429+/-0.000844; mu= 3.4112+/- 0.051
 mean_var=249.6911+/-51.591, 0's: 0 Z-trim(116.7): 31  B-trim: 115 in 1/52
 Lambda= 0.081166
 statistics sampled from 17354 (17383) to 17354 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.534), width:  16
 Scan time:  2.570

The best scores are:                                      opt bits E(32554)
CCDS13620.1 OLIG2 gene_id:10215|Hs108|chr21        ( 323) 2159 264.9 6.1e-71
CCDS5186.1 OLIG3 gene_id:167826|Hs108|chr6         ( 272)  613 83.8 1.7e-16
CCDS6179.1 BHLHE22 gene_id:27319|Hs108|chr8        ( 381)  455 65.4   8e-11


>>CCDS13620.1 OLIG2 gene_id:10215|Hs108|chr21             (323 aa)
 initn: 2159 init1: 2159 opt: 2159  Z-score: 1387.1  bits: 264.9 E(32554): 6.1e-71
Smith-Waterman score: 2159; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)

               10        20        30        40        50        60
pF1KB9 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRLKINSRERKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRLKINSRERKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 MHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKRLVSEIYGGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKRLVSEIYGGH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 HAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQV
              250       260       270       280       290       300

              310       320   
pF1KB9 PPPHHHVSAMGAGSLPRLTSDAK
       :::::::::::::::::::::::
CCDS13 PPPHHHVSAMGAGSLPRLTSDAK
              310       320   

>>CCDS5186.1 OLIG3 gene_id:167826|Hs108|chr6              (272 aa)
 initn: 924 init1: 554 opt: 613  Z-score: 409.7  bits: 83.8 E(32554): 1.7e-16
Smith-Waterman score: 912; 50.2% identity (70.9% similar) in 323 aa overlap (1-323:1-268)

               10        20        30        40        50        60
pF1KB9 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMG
       :.::.: :::: :::. :...:  . .       .  .  ::: .:   ..         
CCDS51 MNSDSSSVSSRASSPDMDEMYLRDHHHRHHHHQESRLNSVSSTQGDMMQKM---------
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB9 SAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRLKINSRERKR
            ::..:. .: :.           :. ::  : :::..: .:::::::::.:::::
CCDS51 -----PGESLSRAGAKA-----------AGESSKYKIKKQLSEQDLQQLRLKINGRERKR
                   60                   70        80        90     

              130       140       150       160       170       180
pF1KB9 MHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKRLVSEIYGGH
       :::::.:::::::::::::::::::::::::::::::::::::.:::::::::.::::::
CCDS51 MHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLEEMKRLVGEIYGGH
         100       110       120       130       140       150     

              190       200       210       220       230       240
pF1KB9 HAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSS
       :..::   :: ..:::      .::: ::...: :.  ::::   ..: ... :.. .:.
CCDS51 HSAFH---CGTVGHSA------GHPAHAANSVH-PV--HPIL---GGALSSGNASSPLSA
         160                170        180            190       200

              250       260       270       280       290       300
pF1KB9 ASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQV
       ::     ::..:.:::::.:::.::.  :  ::         .:::::.:.::::..::.
CCDS51 AS-----LPAIGTIRPPHSLLKAPSTPPALQLG---------SGFQHWAGLPCPCTICQM
                   210       220                230       240      

              310       320       
pF1KB9 PPPHHHVSAMGAGSLPRLTSDAK    
       ::: : .::...... ::....:    
CCDS51 PPPPH-LSALSTANMARLSAESKDLLK
        250        260       270  

>>CCDS6179.1 BHLHE22 gene_id:27319|Hs108|chr8             (381 aa)
 initn: 598 init1: 367 opt: 455  Z-score: 307.8  bits: 65.4 E(32554): 8e-11
Smith-Waterman score: 458; 44.2% identity (68.8% similar) in 224 aa overlap (23-241:167-372)

                       10        20        30        40        50  
pF1KB9         MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELS
                                     :  : :..:    ::. ..   :.   . .
CCDS61 SVAESSGGEQSPDDDSDGRCELVLRAGVADPRASPGAGG----GGAKAAEGCSNAHLHGG
        140       150       160       170           180       190  

              60        70        80        90       100       110 
pF1KB9 AELR-GAMGSAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRL
       : .  :..:..:.  :.. :.::  ..:.: :...::...::.::.:.:      . :::
CCDS61 ASVPPGGLGGGGGG-GSSSGSSGGGGGSGSGSGGSSSSSSSSSKKSKEQ------KALRL
            200        210       220       230       240           

             120       130       140       150       160       170 
pF1KB9 KINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKR
       .::.:::.:::::: :.: :: :.::::.:::::::::::::::.::::: ...::::.:
CCDS61 NINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALEEMRR
         250       260       270       280       290       300     

             180         190       200       210         220       
pF1KB9 LVSEIYGGH--HAGFHPSACGGLAHSAPLPAATAHPAAAAH--AAHHPAVHHPILPPAAA
       ::. .  :.   :.  ::. .. : .: :     ::: .:.  :: .:      :::::.
CCDS61 LVAYLNQGQAISAASLPSSAAAAAAAAAL-----HPALGAYEQAAGYP--FSAGLPPAAS
         310       320       330            340         350        

       230       240       250       260       270       280       
pF1KB9 AAAAAAAAAAVSSASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQH
            :   .:::.                                              
CCDS61 CPEKCALFNSVSSSLCKQCTEKP                                     
      360       370       380                                      




323 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:04:31 2016 done: Tue Nov  8 01:04:32 2016
 Total Scan time:  2.570 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]