Result of FASTA (omim) for
pF1KB9634
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9634, 325 aa
1>>>pF1KB9634 325 - 325 aa - 325 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.5004+/-0.000331; mu= -11.4277+/- 0.021
mean_var=400.3131+/-86.386, 0's: 0 Z-trim(125.8): 23 B-trim: 2693 in 1/60
Lambda= 0.064102
statistics sampled from 50431 (50456) to 50431 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.852), E-opt: 0.2 (0.592), width: 16
Scan time: 9.940
The best scores are: opt bits E(85289)
NP_775180 (OMIM: 139139) nuclear receptor subfamil ( 598) 2060 203.9 6.8e-52
XP_006719427 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 2060 203.9 6.8e-52
NP_002126 (OMIM: 139139) nuclear receptor subfamil ( 598) 2060 203.9 6.8e-52
XP_005268881 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 2060 203.9 6.8e-52
XP_006719426 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 2060 203.9 6.8e-52
XP_016874736 (OMIM: 139139) PREDICTED: nuclear rec ( 602) 2060 203.9 6.8e-52
NP_001189162 (OMIM: 139139) nuclear receptor subfa ( 611) 2060 203.9 6.9e-52
NP_001189163 (OMIM: 139139) nuclear receptor subfa ( 652) 2060 204.0 7.2e-52
XP_005268879 (OMIM: 139139) PREDICTED: nuclear rec ( 670) 2060 204.0 7.4e-52
XP_011509548 (OMIM: 168600,601828) PREDICTED: nucl ( 564) 450 55.0 4.3e-07
XP_016859709 (OMIM: 168600,601828) PREDICTED: nucl ( 573) 450 55.0 4.4e-07
XP_006712616 (OMIM: 168600,601828) PREDICTED: nucl ( 584) 450 55.0 4.4e-07
XP_016859708 (OMIM: 168600,601828) PREDICTED: nucl ( 598) 450 55.0 4.5e-07
NP_006177 (OMIM: 168600,601828) nuclear receptor s ( 598) 450 55.0 4.5e-07
XP_005246678 (OMIM: 168600,601828) PREDICTED: nucl ( 609) 450 55.0 4.6e-07
XP_005246679 (OMIM: 168600,601828) PREDICTED: nucl ( 535) 398 50.2 1.2e-05
>>NP_775180 (OMIM: 139139) nuclear receptor subfamily 4 (598 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 1052.7 bits: 203.9 E(85289): 6.8e-52
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKVPRSPRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
250 260 270 280 290 300
310 320
pF1KB9 LLLEMERGWPHPIGTCGLPLGSPPS
NP_775 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
310 320 330 340 350 360
>>XP_006719427 (OMIM: 139139) PREDICTED: nuclear recepto (598 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 1052.7 bits: 203.9 E(85289): 6.8e-52
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKVPRSPRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
250 260 270 280 290 300
310 320
pF1KB9 LLLEMERGWPHPIGTCGLPLGSPPS
XP_006 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
310 320 330 340 350 360
>>NP_002126 (OMIM: 139139) nuclear receptor subfamily 4 (598 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 1052.7 bits: 203.9 E(85289): 6.8e-52
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKVPRSPRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
250 260 270 280 290 300
310 320
pF1KB9 LLLEMERGWPHPIGTCGLPLGSPPS
NP_002 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
310 320 330 340 350 360
>>XP_005268881 (OMIM: 139139) PREDICTED: nuclear recepto (598 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 1052.7 bits: 203.9 E(85289): 6.8e-52
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKVPRSPRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
250 260 270 280 290 300
310 320
pF1KB9 LLLEMERGWPHPIGTCGLPLGSPPS
XP_005 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
310 320 330 340 350 360
>>XP_006719426 (OMIM: 139139) PREDICTED: nuclear recepto (598 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 1052.7 bits: 203.9 E(85289): 6.8e-52
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKVPRSPRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
250 260 270 280 290 300
310 320
pF1KB9 LLLEMERGWPHPIGTCGLPLGSPPS
XP_006 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
310 320 330 340 350 360
>>XP_016874736 (OMIM: 139139) PREDICTED: nuclear recepto (602 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 1052.6 bits: 203.9 E(85289): 6.8e-52
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:5-296)
10 20 30 40 50
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQEEMPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 MDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 SGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 LPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 SPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKVPRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQ
250 260 270 280 290 300
300 310 320
pF1KB9 PRWGLLLEMERGWPHPIGTCGLPLGSPPS
XP_016 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP
310 320 330 340 350 360
>>NP_001189162 (OMIM: 139139) nuclear receptor subfamily (611 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 1052.5 bits: 203.9 E(85289): 6.9e-52
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:14-305)
10 20 30 40
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAP
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWLAKACWSIQSEMPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 TALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 VYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTY
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 EGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 TAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGC
250 260 270 280 290 300
290 300 310 320
pF1KB9 KGFFKVPRSPRWGLLLEMERGWPHPIGTCGLPLGSPPS
:::::
NP_001 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG
310 320 330 340 350 360
>>NP_001189163 (OMIM: 139139) nuclear receptor subfamily (652 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 1052.2 bits: 204.0 E(85289): 7.2e-52
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:55-346)
10 20 30
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEF
::::::::::::::::::::::::::::::
NP_001 PPRQPGSFCWALKADGIMWLAKACWSIQSEMPCIQAQYGTPAPSPGPRDHLASDPLTPEF
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB9 IKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSS
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB9 SSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQ
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB9 LSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLF
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB9 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVC
270 280 290 300 310 320
280 290 300 310 320
pF1KB9 GDNASCQHYGVRTCEGCKGFFKVPRSPRWGLLLEMERGWPHPIGTCGLPLGSPPS
::::::::::::::::::::::
NP_001 GDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAV
330 340 350 360 370 380
>>XP_005268879 (OMIM: 139139) PREDICTED: nuclear recepto (670 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 1052.0 bits: 204.0 E(85289): 7.4e-52
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:73-364)
10 20 30
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEF
::::::::::::::::::::::::::::::
XP_005 PPRQPGSFCWALKADGIMWLAKACWSIQSEMPCIQAQYGTPAPSPGPRDHLASDPLTPEF
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB9 IKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSS
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB9 SSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQ
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB9 LSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLF
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB9 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVC
290 300 310 320 330 340
280 290 300 310 320
pF1KB9 GDNASCQHYGVRTCEGCKGFFKVPRSPRWGLLLEMERGWPHPIGTCGLPLGSPPS
::::::::::::::::::::::
XP_005 GDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAV
350 360 370 380 390 400
>>XP_011509548 (OMIM: 168600,601828) PREDICTED: nuclear (564 aa)
initn: 441 init1: 216 opt: 450 Z-score: 248.3 bits: 55.0 E(85289): 4.3e-07
Smith-Waterman score: 578; 40.4% identity (61.2% similar) in 322 aa overlap (1-292:12-299)
10 20 30 40
pF1KB9 MPCIQAQYGT-P-APSPGPRDH-------LASDPLTPEFIKPTMDLASP
:::.:::::. : . ::. ... .:: :::::.: .:::..
XP_011 MNEDRRGELLTMPCVQAQYGSSPQGASPASQSYSYHSSGEYSSDFLTPEFVKFSMDLTNT
10 20 30 40 50 60
50 60 70 80 90
pF1KB9 EAAPAAPTALPSFSTFMDGYTGEFDT---FLYQLPGTVQPCSSASSSASSTSSSSATSPA
: . : :.:::::::::.:. .:. :::.: . :
XP_011 EIT--ATTSLPSFSTFMDNYSTGYDVKPPCLYQMPLSGQ---------------------
70 80 90
100 110 120 130 140 150
pF1KB9 SASFKFEDFQVYGCYPGPLSGP-VDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSP-WD
..:.: ::.:... : .: . ::: :: .: : :.:.::.:: : :: ::
XP_011 QSSIKVEDIQMHNYQQHSHLPPQSEEMMPHSGSVYY-KPSSPPTPTTPGFQV-QHSPMWD
100 110 120 130 140 150
160 170 180 190 200
pF1KB9 --GSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSF--SPPTGPSPSLAQ---SPLK
::. .: :.: : :... . . : . ..::: ::: : : . .::.
XP_011 DPGSLHNFH--QNYV---ATTHMIEQRKTPVSRLSLFSFKQSPPGTPVSSCQMRFDGPLH
160 170 180 190 200 210
210 220 230 240 250
pF1KB9 --LFPSQA-THQLGEGESYSMPTAFPGLAPTS---PHLE---GSGILDTPVTSTKARSGA
. : : .:.. .:.....:. : :.: : :. .: .::: : : .: :.
XP_011 VPMNPEPAGSHHVVDGQTFAVPN--PIRKPASMGFPGLQIGHASQLLDTQVPSPPSR-GS
220 230 240 250 260
260 270 280 290 300 310
pF1KB9 PGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKVPRSPRWGLLLEMERGWPHPIGTCGLP
:. .:: ::::::::.:::::::::::::::::
XP_011 PS-NEGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRC
270 280 290 300 310 320
320
pF1KB9 LGSPPS
XP_011 QYCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQEPSPPSPPVSLISALVRAHVDS
330 340 350 360 370 380
325 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:53:17 2016 done: Fri Nov 4 17:53:18 2016
Total Scan time: 9.940 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]