FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9632, 214 aa
  1>>>pF1KB9632 214 - 214 aa - 214 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0454+/-0.000632; mu= 13.5465+/- 0.039
 mean_var=123.3933+/-24.393, 0's: 0 Z-trim(116.2): 47  B-trim: 0 in 0/52
 Lambda= 0.115459
 statistics sampled from 16699 (16747) to 16699 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.514), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS31212.1 NEUROG3 gene_id:50674|Hs108|chr10      ( 214) 1442 249.8 9.4e-67
CCDS4187.1 NEUROG1 gene_id:4762|Hs108|chr5         ( 237)  474 88.6 3.5e-18
CCDS3698.1 NEUROG2 gene_id:63973|Hs108|chr4        ( 272)  414 78.7 3.9e-15


>>CCDS31212.1 NEUROG3 gene_id:50674|Hs108|chr10           (214 aa)
 initn: 1442 init1: 1442 opt: 1442  Z-score: 1311.9  bits: 249.8 E(32554): 9.4e-67
Smith-Waterman score: 1442; 99.5% identity (99.5% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KB9 MTPQPSGAPTVQVTRETERSFPRASEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MTPQPSGAPTVQVTRETERSFPRASEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LRARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LRARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KIETLRFAHNYIWALTQTLRIADHSLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KIETLRFAHNYIWALTQTLRIADHSLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAG
              130       140       150       160       170       180

              190       200       210    
pF1KB9 SLSPAASLEERPGLLGATSSACLSPGSLAFSDFL
       :::::::::::::::::: :::::::::::::::
CCDS31 SLSPAASLEERPGLLGATFSACLSPGSLAFSDFL
              190       200       210    

>>CCDS4187.1 NEUROG1 gene_id:4762|Hs108|chr5              (237 aa)
 initn: 442 init1: 412 opt: 474  Z-score: 439.9  bits: 88.6 E(32554): 3.5e-18
Smith-Waterman score: 489; 53.7% identity (70.9% similar) in 175 aa overlap (34-193:42-213)

            10        20        30        40          50        60 
pF1KB9 QPSGAPTVQVTRETERSFPRASEDEVTCPTSAPPSPTRTRG--NCAEAEEGGCRGAPRKL
                                     :.::.:.: ::  : ..: :       .. 
CCDS41 LDCASSSGSDLSGFLTDEEDCARLQQAASASGPPAPAR-RGAPNISRASEVPGAQDDEQE
              20        30        40         50        60        70

              70        80        90       100       110       120 
pF1KB9 RARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTK
       : :: ::.: .::  : . ::::: ::::::::::::::.::::::.:::.::::.::::
CCDS41 RRRRRGRTRVRSEALLHSLRRSRRVKANDRERNRMHNLNAALDALRSVLPSFPDDTKLTK
               80        90       100       110       120       130

             130       140             150         160       170   
pF1KB9 IETLRFAHNYIWALTQTLRIADHSLYA------LEPP--APHCGELGSPGGSPGDWGS--
       :::::::.::::::..:::.::..: .      : ::  .:      ::...  .:::  
CCDS41 IETLRFAYNYIWALAETLRLADQGLPGGGARERLLPPQCVPCLPGPPSPASDAESWGSGA
              140       150       160       170       180       190

              180         190       200       210       
pF1KB9 -LYSPVSQAGSLSPAAS--LEERPGLLGATSSACLSPGSLAFSDFL   
          ::.:. .:  ::::  .  :::                        
CCDS41 AAASPLSDPSS--PAASEDFTYRPGDPVFSFPSLPKDLLHTTPCFIPYH
              200         210       220       230       

>>CCDS3698.1 NEUROG2 gene_id:63973|Hs108|chr4             (272 aa)
 initn: 419 init1: 372 opt: 414  Z-score: 385.2  bits: 78.7 E(32554): 3.9e-15
Smith-Waterman score: 428; 48.4% identity (64.6% similar) in 192 aa overlap (43-211:64-239)

             20        30        40        50        60            
pF1KB9 VTRETERSFPRASEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRKLRA------RRG
                                     ::. : . :: ::  : .: .      :: 
CCDS36 SSSADEEEEEEPGASGGARRQRGAEAGQGARGGVAAGAEG-CR--PARLLGLVHDCKRRP
            40        50        60        70           80        90

         70             80        90       100       110       120 
pF1KB9 GRSRP-----KSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTK
       .:.:      :.  .... ...:: :::.::::::::::.:::::: ::::::.::::::
CCDS36 SRARAVSRGAKTAETVQRIKKTRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLTK
              100       110       120       130       140       150

             130       140       150       160       170           
pF1KB9 IETLRFAHNYIWALTQTLRIADHSLYALEPPAPHCGELGSPGGSPGDWGS---LYSP---
       :::::::::::::::.:::.:::           ::  :. :: ::   :   : ::   
CCDS36 IETLRFAHNYIWALTETLRLADH-----------CG--GGGGGLPGALFSEAVLLSPGGA
              160       170                    180       190       

            180          190       200       210                   
pF1KB9 ---VSQAG-SLSPAA--SLEERPGLLGATSSACLSPGSLAFSDFL               
          .:..: : :::.  :  . :.  ...::   :: : ..:                  
CCDS36 SAALSSSGDSPSPASTWSCTNSPAPSSSVSSNSTSPYSCTLSPASPAGSDMDYWQPPPPD
       200       210       220       230       240       250       

CCDS36 KHRYAPHLPIARDCI
       260       270  




214 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:51:35 2016 done: Fri Nov  4 17:51:36 2016
 Total Scan time:  2.670 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]