FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9626, 135 aa
  1>>>pF1KB9626 135 - 135 aa - 135 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2137+/-0.000611; mu= 13.3901+/- 0.037
 mean_var=87.9514+/-17.666, 0's: 0 Z-trim(114.7): 69  B-trim: 734 in 1/50
 Lambda= 0.136758
 statistics sampled from 15178 (15256) to 15178 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.469), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS885.1 NHLH2 gene_id:4808|Hs108|chr1            ( 135)  878 181.6 1.3e-46
CCDS1204.1 NHLH1 gene_id:4807|Hs108|chr1           ( 133)  487 104.5 2.1e-23


>>CCDS885.1 NHLH2 gene_id:4808|Hs108|chr1                 (135 aa)
 initn: 878 init1: 878 opt: 878  Z-score: 950.6  bits: 181.6 E(32554): 1.3e-46
Smith-Waterman score: 878; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135)

               10        20        30        40        50        60
pF1KB9 MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR
               70        80        90       100       110       120

              130     
pF1KB9 LAICYISYLNHVLDV
       :::::::::::::::
CCDS88 LAICYISYLNHVLDV
              130     

>>CCDS1204.1 NHLH1 gene_id:4807|Hs108|chr1                (133 aa)
 initn: 478 init1: 461 opt: 487  Z-score: 533.7  bits: 104.5 E(32554): 2.1e-23
Smith-Waterman score: 487; 64.3% identity (75.5% similar) in 143 aa overlap (1-135:1-133)

               10        20        30        40        50        60
pF1KB9 MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP
       :::. : . . : : . ::. :: : .:    :...   :  .. : :  :.  :  :.:
CCDS12 MMLNSD-TMELDLPPT-HSETES-GFSDCG--GGAG---P--DGAGPGGPGGGQARGPEP
                10         20           30             40        50

                       70        80        90       100       110  
pF1KB9 --------QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKK
               :.:::::.:::::::::::.::::::::::::::::::::::::::::::::
CCDS12 GEPGRKDLQHLSREERRRRRRATAKYRTAHATRERIRVEAFNLAFAELRKLLPTLPPDKK
               60        70        80        90       100       110

            120       130     
pF1KB9 LSKIEILRLAICYISYLNHVLDV
       :::::::::::::::::::::::
CCDS12 LSKIEILRLAICYISYLNHVLDV
              120       130   




135 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:15:41 2016 done: Sat Nov  5 20:15:42 2016
 Total Scan time:  1.640 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]