FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9623, 146 aa
  1>>>pF1KB9623 146 - 146 aa - 146 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7867+/-0.000572; mu= 9.7202+/- 0.035
 mean_var=71.9582+/-14.008, 0's: 0 Z-trim(113.7): 13  B-trim: 0 in 0/50
 Lambda= 0.151194
 statistics sampled from 14341 (14354) to 14341 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.441), width:  16
 Scan time:  1.920

The best scores are:                                      opt bits E(32554)
CCDS14672.1 LDOC1 gene_id:23641|Hs108|chrX         ( 146)  991 224.1 2.3e-59
CCDS43996.1 FAM127C gene_id:441518|Hs108|chrX      ( 113)  445 105.0 1.3e-23
CCDS43998.1 FAM127B gene_id:26071|Hs108|chrX       ( 113)  434 102.6   7e-23
CCDS43997.1 FAM127A gene_id:8933|Hs108|chrX        ( 113)  432 102.2 9.4e-23
CCDS33662.1 LDOC1L gene_id:84247|Hs108|chr22       ( 239)  256 63.9 6.5e-11


>>CCDS14672.1 LDOC1 gene_id:23641|Hs108|chrX              (146 aa)
 initn: 991 init1: 991 opt: 991  Z-score: 1179.2  bits: 224.1 E(32554): 2.3e-59
Smith-Waterman score: 991; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KB9 MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPPSCPVPFPETFNGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPPSCPVPFPETFNGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRA
               70        80        90       100       110       120

              130       140      
pF1KB9 FLDEMKQCFGWDDDEDDDDEEEEDDY
       ::::::::::::::::::::::::::
CCDS14 FLDEMKQCFGWDDDEDDDDEEEEDDY
              130       140      

>>CCDS43996.1 FAM127C gene_id:441518|Hs108|chrX           (113 aa)
 initn: 451 init1: 433 opt: 445  Z-score: 537.3  bits: 105.0 E(32554): 1.3e-23
Smith-Waterman score: 445; 60.6% identity (83.7% similar) in 104 aa overlap (37-136:9-112)

         10        20        30        40            50        60  
pF1KB9 LLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPPS----CPVPFPETFNGESS
                                     .: : : .:: .     :.::::::.:...
CCDS43                       MEGRVQLMKALLARPLRPAARRWRNPIPFPETFDGDTD
                                     10        20        30        

             70        80        90       100       110       120  
pF1KB9 RLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFL
       :::::::::.:::.:.:: : :::.::.:::. ::: : .::.:::. .::.:.:::.::
CCDS43 RLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIKKESPLLSDYRGFL
       40        50        60        70        80        90        

            130       140      
pF1KB9 DEMKQCFGWDDDEDDDDEEEEDDY
        :::. :::..:::          
CCDS43 AEMKRVFGWEEDEDF         
      100       110            

>>CCDS43998.1 FAM127B gene_id:26071|Hs108|chrX            (113 aa)
 initn: 442 init1: 432 opt: 434  Z-score: 524.3  bits: 102.6 E(32554): 7e-23
Smith-Waterman score: 434; 59.6% identity (82.7% similar) in 104 aa overlap (37-136:9-112)

         10        20        30        40            50        60  
pF1KB9 LLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPPS----CPVPFPETFNGESS
                                     .: :   .:: .     :.::::::.:...
CCDS43                       MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTD
                                     10        20        30        

             70        80        90       100       110       120  
pF1KB9 RLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFL
       :::::::::.:::.:.:: : :::.::.:::. ::: : .::.:::. .::.:.:::.::
CCDS43 RLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFL
       40        50        60        70        80        90        

            130       140      
pF1KB9 DEMKQCFGWDDDEDDDDEEEEDDY
        :::. :::..:::          
CCDS43 AEMKRVFGWEEDEDF         
      100       110            

>>CCDS43997.1 FAM127A gene_id:8933|Hs108|chrX             (113 aa)
 initn: 426 init1: 426 opt: 432  Z-score: 521.9  bits: 102.2 E(32554): 9.4e-23
Smith-Waterman score: 432; 58.7% identity (82.7% similar) in 104 aa overlap (37-136:9-112)

         10        20        30        40            50        60  
pF1KB9 LLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPPS----CPVPFPETFNGESS
                                     .: :   .:: .     :.::::::.:...
CCDS43                       MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTD
                                     10        20        30        

             70        80        90       100       110       120  
pF1KB9 RLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFL
       :::::::::.:::.:.:: : .::.::.:::. ::: : .::.:::. .::.:.:::.::
CCDS43 RLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFL
       40        50        60        70        80        90        

            130       140      
pF1KB9 DEMKQCFGWDDDEDDDDEEEEDDY
        :::. :::..:::          
CCDS43 AEMKRVFGWEEDEDF         
      100       110            

>>CCDS33662.1 LDOC1L gene_id:84247|Hs108|chr22            (239 aa)
 initn: 261 init1: 243 opt: 256  Z-score: 309.4  bits: 63.9 E(32554): 6.5e-11
Smith-Waterman score: 256; 40.7% identity (76.7% similar) in 86 aa overlap (45-129:92-177)

           20        30        40        50         60        70   
pF1KB9 RHRALSIENSQLMEQLRLLVCERASLLRQVRPPSCP-VPFPETFNGESSRLPEFIVQTAS
                                     :: . : . .:: :.:. .::  :..:   
CCDS33 AELTLLRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGRLAGFLMQMDR
              70        80        90       100       110       120 

            80        90       100       110       120       130   
pF1KB9 YMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQCFGWDD
       .:. . .:: ..: .::::.: ::::::.:..:... :::. ..:..:: :... .    
CCDS33 FMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSPLRNNYQGFLAELRRTYKSPL
             130       140       150       160       170       180 

           140                                                   
pF1KB9 DEDDDDEEEEDDY                                             
                                                                 
CCDS33 RHARRAQIRKTSASNRAVRERQMLCRQLASAGTGPCPVHPASNGTSPAPALPARARNL
             190       200       210       220       230         




146 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:46:15 2016 done: Fri Nov  4 17:46:16 2016
 Total Scan time:  1.920 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]