Result of FASTA (omim) for
pF1KB9620
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9620, 347 aa
1>>>pF1KB9620 347 - 347 aa - 347 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.3052+/-0.000375; mu= -2.3391+/- 0.024
mean_var=399.4195+/-81.063, 0's: 0 Z-trim(125.4): 8 B-trim: 0 in 0/59
Lambda= 0.064174
statistics sampled from 49061 (49069) to 49061 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.833), E-opt: 0.2 (0.575), width: 16
Scan time: 11.140
The best scores are: opt bits E(85289)
NP_005345 (OMIM: 165162) transcription factor jun- ( 347) 2260 222.4 1.2e-57
NP_001273897 (OMIM: 165162) transcription factor j ( 304) 1966 195.1 1.7e-49
NP_002219 (OMIM: 165160) transcription factor AP-1 ( 331) 731 80.8 4.7e-15
NP_002220 (OMIM: 165161) transcription factor jun- ( 347) 660 74.2 4.6e-13
>>NP_005345 (OMIM: 165162) transcription factor jun-D is (347 aa)
initn: 2260 init1: 2260 opt: 2260 Z-score: 1156.1 bits: 222.4 E(85289): 1.2e-57
Smith-Waterman score: 2260; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KB9 METPFYGDEALSGLGGGASGSGGSFASPGRLFPGAPPTAAAGSMMKKDALTLSLSEQVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 METPFYGDEALSGLGGGASGSGGSFASPGRLFPGAPPTAAAGSMMKKDALTLSLSEQVAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ALKPAAAPPPTPLRADGAPSAAPPDGLLASPDLGLLKLASPELERLIIQSNGLVTTTPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ALKPAAAPPPTPLRADGAPSAAPPDGLLASPDLGLLKLASPELERLIIQSNGLVTTTPTS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SQFLYPKVAASEEQEFAEGFVKALEDLHKQNQLGAGAAAAAAAAAAGGPSGTATGSAPPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SQFLYPKVAASEEQEFAEGFVKALEDLHKQNQLGAGAAAAAAAAAAGGPSGTATGSAPPG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 ELAPAAAAPEAPVYANLSSYAGGAGGAGGAATVAFAAEPVPFPPPPPPGALGPPRLAALK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ELAPAAAAPEAPVYANLSSYAGGAGGAGGAATVAFAAEPVPFPPPPPPGALGPPRLAALK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DEPQTVPDVPSFGESPPLSPIDMDTQERIKAERKRLRNRIAASKCRKRKLERISRLEEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DEPQTVPDVPSFGESPPLSPIDMDTQERIKAERKRLRNRIAASKCRKRKLERISRLEEKV
250 260 270 280 290 300
310 320 330 340
pF1KB9 KTLKSQNTELASTASLLREQVAQLKQKVLSHVNSGCQLLPQHQVPAY
:::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KTLKSQNTELASTASLLREQVAQLKQKVLSHVNSGCQLLPQHQVPAY
310 320 330 340
>>NP_001273897 (OMIM: 165162) transcription factor jun-D (304 aa)
initn: 1966 init1: 1966 opt: 1966 Z-score: 1009.7 bits: 195.1 E(85289): 1.7e-49
Smith-Waterman score: 1966; 100.0% identity (100.0% similar) in 304 aa overlap (44-347:1-304)
20 30 40 50 60 70
pF1KB9 LGGGASGSGGSFASPGRLFPGAPPTAAAGSMMKKDALTLSLSEQVAAALKPAAAPPPTPL
::::::::::::::::::::::::::::::
NP_001 MMKKDALTLSLSEQVAAALKPAAAPPPTPL
10 20 30
80 90 100 110 120 130
pF1KB9 RADGAPSAAPPDGLLASPDLGLLKLASPELERLIIQSNGLVTTTPTSSQFLYPKVAASEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RADGAPSAAPPDGLLASPDLGLLKLASPELERLIIQSNGLVTTTPTSSQFLYPKVAASEE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB9 QEFAEGFVKALEDLHKQNQLGAGAAAAAAAAAAGGPSGTATGSAPPGELAPAAAAPEAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEFAEGFVKALEDLHKQNQLGAGAAAAAAAAAAGGPSGTATGSAPPGELAPAAAAPEAPV
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB9 YANLSSYAGGAGGAGGAATVAFAAEPVPFPPPPPPGALGPPRLAALKDEPQTVPDVPSFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YANLSSYAGGAGGAGGAATVAFAAEPVPFPPPPPPGALGPPRLAALKDEPQTVPDVPSFG
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB9 ESPPLSPIDMDTQERIKAERKRLRNRIAASKCRKRKLERISRLEEKVKTLKSQNTELAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESPPLSPIDMDTQERIKAERKRLRNRIAASKCRKRKLERISRLEEKVKTLKSQNTELAST
220 230 240 250 260 270
320 330 340
pF1KB9 ASLLREQVAQLKQKVLSHVNSGCQLLPQHQVPAY
::::::::::::::::::::::::::::::::::
NP_001 ASLLREQVAQLKQKVLSHVNSGCQLLPQHQVPAY
280 290 300
>>NP_002219 (OMIM: 165160) transcription factor AP-1 [Ho (331 aa)
initn: 868 init1: 502 opt: 731 Z-score: 391.3 bits: 80.8 E(85289): 4.7e-15
Smith-Waterman score: 989; 52.8% identity (71.8% similar) in 362 aa overlap (1-347:5-331)
10 20 30 40 50
pF1KB9 METPFYGDEALSGLGGGASGSGGSFASPGRLFPGAPPTAAAGSMMKKDALTLSLSE
::: :: : ... . :: : ...: : :...::.:..
NP_002 MTAKMETTFYDDALNASFLPSESGPYG-YSNPKIL---------------KQSMTLNLAD
10 20 30 40
60 70 80 90 100 110
pF1KB9 QVAAALKPAAAPPPTPLRADGAPSAAPPDGLLASPDLGLLKLASPELERLIIQS-NGLVT
:.. ::: ::: .. ::.:::.::::::::::::::::: :: .:
NP_002 PVGS-LKPH-------LRAKNSD-------LLTSPDVGLLKLASPELERLIIQSSNGHIT
50 60 70 80
120 130 140 150 160 170
pF1KB9 TTPTSSQFLYPKVAASEEQEFAEGFVKALEDLHKQNQLGAGAAAAAAAAAAG--GPS-GT
:::: .::: :: ...:.. ::::::.:: .::.:: : . ..:: . .:: .:. ..
NP_002 TTPTPTQFLCPKNVTDEQEGFAEGFVRALAELHSQNTLPSVTSAAQPVNGAGMVAPAVAS
90 100 110 120 130 140
180 190 200 210 220
pF1KB9 ATGSAPPGELAPAAAAPEAPVYANLSSYAGGA----GGAG--GAATVAFAAEPVPFPPPP
..:.. : .. :. : :::::::.. :: ::: ::: .:: :.: ::
NP_002 VAGGSGSGGFS-ASLHSEPPVYANLSNFNPGALSSGGGAPSYGAAGLAFPAQPQQQQQPP
150 160 170 180 190 200
230 240 250 260 270 280
pF1KB9 P--PGALGP---PRLAALKDEPQTVPDVPSFGESPPLSPIDMDTQERIKAERKRLRNRIA
: . : ::: :::.::::::..: ::.::::::::..::::::::::.:::::
NP_002 HHLPQQM-PVQHPRLQALKEEPQTVPEMP--GETPPLSPIDMESQERIKAERKRMRNRIA
210 220 230 240 250 260
290 300 310 320 330 340
pF1KB9 ASKCRKRKLERISRLEEKVKTLKSQNTELASTASLLREQVAQLKQKVLSHVNSGCQLLPQ
::::::::::::.::::::::::.::.::::::..::::::::::::..::::::::.
NP_002 ASKCRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNHVNSGCQLMLT
270 280 290 300 310 320
pF1KB9 HQVPAY
.:. ..
NP_002 QQLQTF
330
>>NP_002220 (OMIM: 165161) transcription factor jun-B [H (347 aa)
initn: 605 init1: 545 opt: 660 Z-score: 355.6 bits: 74.2 E(85289): 4.6e-13
Smith-Waterman score: 804; 45.0% identity (66.7% similar) in 369 aa overlap (1-339:5-339)
10 20 30 40 50
pF1KB9 METPFYGDEALSGLGGGASGSGGSFASPGRLFPGAPPTAAAGSMMKKDALTLSLSE
:: ::: :.. .. : : . .: :. . : : .:...:..
NP_002 MCTKMEQPFYHDDSYTATGYGRAPGGLSLHDYKLLKP---------------SLAVNLAD
10 20 30 40
60 70 80 90 100 110
pF1KB9 QVAAALKPAAAPPPTPLRADGAPSAAPPDGLLASPDLGL-LKLASPELERLII-QSNGLV
. :: .: : : .. :. : .: : : ::::: ::::::. .:::..
NP_002 PYRS-LKAPGARGPGP-EGGGGGSYFSGQG----SDTGASLKLASSELERLIVPNSNGVI
50 60 70 80 90
120 130 140 150
pF1KB9 TTTPTS-SQFLYPKVAAS------------EEQE-FAEGFVKALEDLHKQNQLGA-GAAA
::::: .:..::. ..: :::: ::.::::::.::::.:.. ...
NP_002 TTTPTPPGQYFYPRGGGSGGGAGGAGGGVTEEQEGFADGFVKALDDLHKMNHVTPPNVSL
100 110 120 130 140 150
160 170 180 190 200 210
pF1KB9 AAAAAAAGGPSGTATGSAPPGELAPAAAAPEAPVYANLSSYA------GGAGGAGGAATV
.:... .::.:. .: :: :::.:::::. ::::.: :...
NP_002 GATGGPPAGPGGVYAGPEPP------------PVYTNLSSYSPASASSGGAGAAVGTGS-
160 170 180 190 200
220 230 240 250 260
pF1KB9 AFAAEPVPFPPPPPPGALGPP------RLAA-LKDEPQTVPDVPSFGESPPLSPIDMDTQ
.. . . . : :: : : : : :. .:.::::::.. : .::.:::.:. :
NP_002 SYPTTTISYLPHAPPFAGGHPAQLGLGRGASTFKEEPQTVPEARSRDATPPVSPINMEDQ
210 220 230 240 250 260
270 280 290 300 310 320
pF1KB9 ERIKAERKRLRNRIAASKCRKRKLERISRLEEKVKTLKSQNTELASTASLLREQVAQLKQ
::::.::::::::.::.::::::::::.:::.::::::..:. :.:::.:::::::::::
NP_002 ERIKVERKRLRNRLAATKCRKRKLERIARLEDKVKTLKAENAGLSSTAGLLREQVAQLKQ
270 280 290 300 310 320
330 340
pF1KB9 KVLSHVNSGCQLLPQHQVPAY
::..::..:::::
NP_002 KVMTHVSNGCQLLLGVKGHAF
330 340
347 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:12:56 2016 done: Sun Nov 6 12:12:58 2016
Total Scan time: 11.140 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]