Result of FASTA (ccds) for
pF1KB9620
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9620, 347 aa
1>>>pF1KB9620 347 - 347 aa - 347 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.0822+/-0.000898; mu= -0.9635+/- 0.055
mean_var=358.0366+/-73.890, 0's: 0 Z-trim(117.7): 10 B-trim: 179 in 1/54
Lambda= 0.067781
statistics sampled from 18502 (18511) to 18502 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.569), width: 16
Scan time: 3.160
The best scores are: opt bits E(32554)
CCDS32959.1 JUND gene_id:3727|Hs108|chr19 ( 347) 2260 233.9 1.6e-61
CCDS610.1 JUN gene_id:3725|Hs108|chr1 ( 331) 731 84.3 1.6e-16
CCDS12280.1 JUNB gene_id:3726|Hs108|chr19 ( 347) 660 77.4 2e-14
>>CCDS32959.1 JUND gene_id:3727|Hs108|chr19 (347 aa)
initn: 2260 init1: 2260 opt: 2260 Z-score: 1218.1 bits: 233.9 E(32554): 1.6e-61
Smith-Waterman score: 2260; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KB9 METPFYGDEALSGLGGGASGSGGSFASPGRLFPGAPPTAAAGSMMKKDALTLSLSEQVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 METPFYGDEALSGLGGGASGSGGSFASPGRLFPGAPPTAAAGSMMKKDALTLSLSEQVAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ALKPAAAPPPTPLRADGAPSAAPPDGLLASPDLGLLKLASPELERLIIQSNGLVTTTPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ALKPAAAPPPTPLRADGAPSAAPPDGLLASPDLGLLKLASPELERLIIQSNGLVTTTPTS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SQFLYPKVAASEEQEFAEGFVKALEDLHKQNQLGAGAAAAAAAAAAGGPSGTATGSAPPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SQFLYPKVAASEEQEFAEGFVKALEDLHKQNQLGAGAAAAAAAAAAGGPSGTATGSAPPG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 ELAPAAAAPEAPVYANLSSYAGGAGGAGGAATVAFAAEPVPFPPPPPPGALGPPRLAALK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ELAPAAAAPEAPVYANLSSYAGGAGGAGGAATVAFAAEPVPFPPPPPPGALGPPRLAALK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DEPQTVPDVPSFGESPPLSPIDMDTQERIKAERKRLRNRIAASKCRKRKLERISRLEEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DEPQTVPDVPSFGESPPLSPIDMDTQERIKAERKRLRNRIAASKCRKRKLERISRLEEKV
250 260 270 280 290 300
310 320 330 340
pF1KB9 KTLKSQNTELASTASLLREQVAQLKQKVLSHVNSGCQLLPQHQVPAY
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KTLKSQNTELASTASLLREQVAQLKQKVLSHVNSGCQLLPQHQVPAY
310 320 330 340
>>CCDS610.1 JUN gene_id:3725|Hs108|chr1 (331 aa)
initn: 868 init1: 502 opt: 731 Z-score: 410.3 bits: 84.3 E(32554): 1.6e-16
Smith-Waterman score: 989; 52.8% identity (71.8% similar) in 362 aa overlap (1-347:5-331)
10 20 30 40 50
pF1KB9 METPFYGDEALSGLGGGASGSGGSFASPGRLFPGAPPTAAAGSMMKKDALTLSLSE
::: :: : ... . :: : ...: : :...::.:..
CCDS61 MTAKMETTFYDDALNASFLPSESGPYG-YSNPKIL---------------KQSMTLNLAD
10 20 30 40
60 70 80 90 100 110
pF1KB9 QVAAALKPAAAPPPTPLRADGAPSAAPPDGLLASPDLGLLKLASPELERLIIQS-NGLVT
:.. ::: ::: .. ::.:::.::::::::::::::::: :: .:
CCDS61 PVGS-LKPH-------LRAKNSD-------LLTSPDVGLLKLASPELERLIIQSSNGHIT
50 60 70 80
120 130 140 150 160 170
pF1KB9 TTPTSSQFLYPKVAASEEQEFAEGFVKALEDLHKQNQLGAGAAAAAAAAAAG--GPS-GT
:::: .::: :: ...:.. ::::::.:: .::.:: : . ..:: . .:: .:. ..
CCDS61 TTPTPTQFLCPKNVTDEQEGFAEGFVRALAELHSQNTLPSVTSAAQPVNGAGMVAPAVAS
90 100 110 120 130 140
180 190 200 210 220
pF1KB9 ATGSAPPGELAPAAAAPEAPVYANLSSYAGGA----GGAG--GAATVAFAAEPVPFPPPP
..:.. : .. :. : :::::::.. :: ::: ::: .:: :.: ::
CCDS61 VAGGSGSGGFS-ASLHSEPPVYANLSNFNPGALSSGGGAPSYGAAGLAFPAQPQQQQQPP
150 160 170 180 190 200
230 240 250 260 270 280
pF1KB9 P--PGALGP---PRLAALKDEPQTVPDVPSFGESPPLSPIDMDTQERIKAERKRLRNRIA
: . : ::: :::.::::::..: ::.::::::::..::::::::::.:::::
CCDS61 HHLPQQM-PVQHPRLQALKEEPQTVPEMP--GETPPLSPIDMESQERIKAERKRMRNRIA
210 220 230 240 250 260
290 300 310 320 330 340
pF1KB9 ASKCRKRKLERISRLEEKVKTLKSQNTELASTASLLREQVAQLKQKVLSHVNSGCQLLPQ
::::::::::::.::::::::::.::.::::::..::::::::::::..::::::::.
CCDS61 ASKCRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNHVNSGCQLMLT
270 280 290 300 310 320
pF1KB9 HQVPAY
.:. ..
CCDS61 QQLQTF
330
>>CCDS12280.1 JUNB gene_id:3726|Hs108|chr19 (347 aa)
initn: 605 init1: 545 opt: 660 Z-score: 372.5 bits: 77.4 E(32554): 2e-14
Smith-Waterman score: 804; 45.0% identity (66.7% similar) in 369 aa overlap (1-339:5-339)
10 20 30 40 50
pF1KB9 METPFYGDEALSGLGGGASGSGGSFASPGRLFPGAPPTAAAGSMMKKDALTLSLSE
:: ::: :.. .. : : . .: :. . : : .:...:..
CCDS12 MCTKMEQPFYHDDSYTATGYGRAPGGLSLHDYKLLKP---------------SLAVNLAD
10 20 30 40
60 70 80 90 100 110
pF1KB9 QVAAALKPAAAPPPTPLRADGAPSAAPPDGLLASPDLGL-LKLASPELERLII-QSNGLV
. :: .: : : .. :. : .: : : ::::: ::::::. .:::..
CCDS12 PYRS-LKAPGARGPGP-EGGGGGSYFSGQG----SDTGASLKLASSELERLIVPNSNGVI
50 60 70 80 90
120 130 140 150
pF1KB9 TTTPTS-SQFLYPKVAAS------------EEQE-FAEGFVKALEDLHKQNQLGA-GAAA
::::: .:..::. ..: :::: ::.::::::.::::.:.. ...
CCDS12 TTTPTPPGQYFYPRGGGSGGGAGGAGGGVTEEQEGFADGFVKALDDLHKMNHVTPPNVSL
100 110 120 130 140 150
160 170 180 190 200 210
pF1KB9 AAAAAAAGGPSGTATGSAPPGELAPAAAAPEAPVYANLSSYA------GGAGGAGGAATV
.:... .::.:. .: :: :::.:::::. ::::.: :...
CCDS12 GATGGPPAGPGGVYAGPEPP------------PVYTNLSSYSPASASSGGAGAAVGTGS-
160 170 180 190 200
220 230 240 250 260
pF1KB9 AFAAEPVPFPPPPPPGALGPP------RLAA-LKDEPQTVPDVPSFGESPPLSPIDMDTQ
.. . . . : :: : : : : :. .:.::::::.. : .::.:::.:. :
CCDS12 SYPTTTISYLPHAPPFAGGHPAQLGLGRGASTFKEEPQTVPEARSRDATPPVSPINMEDQ
210 220 230 240 250 260
270 280 290 300 310 320
pF1KB9 ERIKAERKRLRNRIAASKCRKRKLERISRLEEKVKTLKSQNTELASTASLLREQVAQLKQ
::::.::::::::.::.::::::::::.:::.::::::..:. :.:::.:::::::::::
CCDS12 ERIKVERKRLRNRLAATKCRKRKLERIARLEDKVKTLKAENAGLSSTAGLLREQVAQLKQ
270 280 290 300 310 320
330 340
pF1KB9 KVLSHVNSGCQLLPQHQVPAY
::..::..:::::
CCDS12 KVMTHVSNGCQLLLGVKGHAF
330 340
347 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:12:55 2016 done: Sun Nov 6 12:12:56 2016
Total Scan time: 3.160 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]