FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9615, 264 aa
  1>>>pF1KB9615 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9764+/-0.000721; mu= 5.5888+/- 0.043
 mean_var=231.6145+/-48.073, 0's: 0 Z-trim(118.2): 880  B-trim: 164 in 1/54
 Lambda= 0.084274
 statistics sampled from 18165 (19148) to 18165 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.86), E-opt: 0.2 (0.588), width:  16
 Scan time:  3.080

The best scores are:                                      opt bits E(32554)
CCDS12929.1 ZNF524 gene_id:147807|Hs108|chr19      ( 264) 1891 241.5 4.5e-64
CCDS12932.1 ZNF581 gene_id:51545|Hs108|chr19       ( 197)  639 89.2 2.5e-18
CCDS12928.1 FIZ1 gene_id:84922|Hs108|chr19         ( 496)  454 67.1 2.7e-11


>>CCDS12929.1 ZNF524 gene_id:147807|Hs108|chr19           (264 aa)
 initn: 1891 init1: 1891 opt: 1891  Z-score: 1263.8  bits: 241.5 E(32554): 4.5e-64
Smith-Waterman score: 1891; 99.2% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB9 MDTPSPDPLPSPLPGEEEKPLALSPPVPRGRRGRRPGGATSSNRTLKASLPRKRGRPPKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDTPSPDPLPSPLPGEEEKPLALSPPVPRGRRGRRPGGATSSNRTLKASLPRKRGRPPKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GQEPPLVQVQGVTAPVGSSGGSDLLLIDDQGVPYTVSEGSAAGPEGSGPRKAPHFCPVCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GQEPPLVQVQGVTAPVGSSGGSDLLLIDDQGVPYTVSEGSAAGPEGSGPRKAPHFCPVCL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RAFPYLSDLERHSISHSELKPHQCKVCGKTFKRSSHLRRHCNIHAGLRPFRCPLCPRRFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RAFPYLSDLERHSISHSELKPHQCKVCGKTFKRSSHLRRHCNIHAGLRPFRCPLCPRRFR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EAGELAHHHRVHSGERPYQCPICRLRFTEANTLRRHAERKHPEAMGVPLCAPDPGSEPPW
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS12 EAGELAHHHRVHSGERPYQCPICRLRFTEANTLRRHAKRKHPEAMGVPLCAPDPGSEPPW
              190       200       210       220       230       240

              250       260    
pF1KB9 DEEGIPSTAGAEEEEETEGKGEPA
       ::::::.:::::::::::::::::
CCDS12 DEEGIPATAGAEEEEETEGKGEPA
              250       260    

>>CCDS12932.1 ZNF581 gene_id:51545|Hs108|chr19            (197 aa)
 initn: 517 init1: 307 opt: 639  Z-score: 442.6  bits: 89.2 E(32554): 2.5e-18
Smith-Waterman score: 639; 53.2% identity (70.5% similar) in 190 aa overlap (39-222:13-197)

       10        20        30        40        50        60        
pF1KB9 LPSPLPGEEEKPLALSPPVPRGRRGRRPGGATSSNRTLKASLPRKRGRPPKSGQEPPLVQ
                                     : :: .:...  ::.  : :. :    . .
CCDS12                   MLVLPSPCPQPLAFSSVETMEGP-PRRTCRSPEPGPSSSIGS
                                 10        20         30        40 

       70        80        90         100         110       120    
pF1KB9 VQGVTAPVGSSGGSDLLLIDDQGVPYTV--SEGSAAGPEGSG-P-RKAPHFCPVCLRAFP
        :. . :  .      :::: :::::::  .: :   : .:: : .:  . :::: :.: 
CCDS12 PQASSPPRPNH----YLLIDTQGVPYTVLVDEESQREPGASGAPGQKKCYSCPVCSRVFE
              50            60        70        80        90       

          130       140       150       160         170       180  
pF1KB9 YLSDLERHSISHSELKPHQCKVCGKTFKRSSHLRRHCNIH--AGLRPFRCPLCPRRFREA
       :.: :.::::.:::.:: .: .:::.:::.::: :: .::  .: ::  :::::::::.:
CCDS12 YMSYLQRHSITHSEVKPFECDICGKAFKRASHLARHHSIHLAGGGRPHGCPLCPRRFRDA
       100       110       120       130       140       150       

            190       200       210       220       230       240  
pF1KB9 GELAHHHRVHSGERPYQCPICRLRFTEANTLRRHAERKHPEAMGVPLCAPDPGSEPPWDE
       ::::.: ::::::::.::: :  :: : :::..:.. :::                    
CCDS12 GELAQHSRVHSGERPFQCPHCPRRFMEQNTLQKHTRWKHP                    
       160       170       180       190                           

            250       260    
pF1KB9 EGIPSTAGAEEEEETEGKGEPA

>>CCDS12928.1 FIZ1 gene_id:84922|Hs108|chr19              (496 aa)
 initn: 433 init1: 433 opt: 454  Z-score: 316.2  bits: 67.1 E(32554): 2.7e-11
Smith-Waterman score: 454; 43.6% identity (63.8% similar) in 149 aa overlap (87-235:1-143)

         60        70        80        90       100       110      
pF1KB9 PPKSGQEPPLVQVQGVTAPVGSSGGSDLLLIDDQGVPYTVSEGSAAGPEGSGPRKAPHFC
                                     .::  .:      . : : ...:: .:  :
CCDS12                               MDDVPAPTP----APAPPAAAAPR-VPFHC
                                                 10        20      

        120       130       140       150       160       170      
pF1KB9 PVCLRAFPYLSDLERHSISHSELKPHQCKVCGKTFKRSSHLRRHCNIHAGLRPFRCPLCP
         : ..: : :::.::   :. :::: :  ::: ::.: .:  :   :.: ::.::  ::
CCDS12 SECGKSFRYRSDLRRHFARHTALKPHACPRCGKGFKHSFNLANHLRSHTGERPYRCSACP
          30        40        50        60        70        80     

        180       190       200       210       220       230      
pF1KB9 RRFREAGELAHHHRVHSGERPYQCPICRLRFTEANTLRRHAERKHPEAMGVPLCAPDPGS
       . ::..  : ::. ::.::.:: : .:.:::.  ..: :: .:.:  ..  ::  : :: 
CCDS12 KGFRDSTGLLHHQVVHTGEKPYCCLVCELRFSSRSSLGRHLKRQHRGVLPSPL-QPGPGL
          90       100       110       120       130        140    

        240       250       260                                    
pF1KB9 EPPWDEEGIPSTAGAEEEEETEGKGEPA                                
                                                                   
CCDS12 PALSAPCSVCCNVGPCSVCGGSGAGGGEGPEGAGAGLGSWGLAEAAAAAAASLPPFACGA
          150       160       170       180       190       200    




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:44:05 2016 done: Fri Nov  4 17:44:06 2016
 Total Scan time:  3.080 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]