Result of FASTA (omim) for
pF1KB9606
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9606, 359 aa
1>>>pF1KB9606 359 - 359 aa - 359 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1560+/-0.000298; mu= 5.9399+/- 0.019
mean_var=195.9490+/-39.145, 0's: 0 Z-trim(124.0): 19 B-trim: 2043 in 1/58
Lambda= 0.091623
statistics sampled from 44967 (44986) to 44967 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.527), width: 16
Scan time: 9.480
The best scores are: opt bits E(85289)
NP_006451 (OMIM: 607328) protein HEXIM1 [Homo sapi ( 359) 2466 337.6 2.6e-92
XP_016879656 (OMIM: 615695) PREDICTED: protein HEX ( 286) 454 71.5 2.6e-12
XP_016879657 (OMIM: 615695) PREDICTED: protein HEX ( 286) 454 71.5 2.6e-12
NP_001290369 (OMIM: 615695) protein HEXIM2 isoform ( 286) 454 71.5 2.6e-12
NP_001290370 (OMIM: 615695) protein HEXIM2 isoform ( 286) 454 71.5 2.6e-12
XP_016879658 (OMIM: 615695) PREDICTED: protein HEX ( 286) 454 71.5 2.6e-12
NP_001290368 (OMIM: 615695) protein HEXIM2 isoform ( 286) 454 71.5 2.6e-12
NP_001290373 (OMIM: 615695) protein HEXIM2 isoform ( 286) 454 71.5 2.6e-12
XP_011522608 (OMIM: 615695) PREDICTED: protein HEX ( 286) 454 71.5 2.6e-12
NP_001290372 (OMIM: 615695) protein HEXIM2 isoform ( 286) 454 71.5 2.6e-12
NP_001290367 (OMIM: 615695) protein HEXIM2 isoform ( 286) 454 71.5 2.6e-12
NP_653209 (OMIM: 615695) protein HEXIM2 isoform 1 ( 286) 454 71.5 2.6e-12
XP_016879659 (OMIM: 615695) PREDICTED: protein HEX ( 286) 454 71.5 2.6e-12
NP_001290371 (OMIM: 615695) protein HEXIM2 isoform ( 286) 454 71.5 2.6e-12
NP_001290366 (OMIM: 615695) protein HEXIM2 isoform ( 286) 454 71.5 2.6e-12
NP_001290365 (OMIM: 615695) protein HEXIM2 isoform ( 308) 454 71.6 2.7e-12
XP_006721750 (OMIM: 615695) PREDICTED: protein HEX ( 309) 454 71.6 2.7e-12
XP_011522609 (OMIM: 615695) PREDICTED: protein HEX ( 446) 454 71.7 3.6e-12
XP_011522610 (OMIM: 615695) PREDICTED: protein HEX ( 447) 454 71.7 3.6e-12
>>NP_006451 (OMIM: 607328) protein HEXIM1 [Homo sapiens] (359 aa)
initn: 2466 init1: 2466 opt: 2466 Z-score: 1778.1 bits: 337.6 E(85289): 2.6e-92
Smith-Waterman score: 2466; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)
10 20 30 40 50 60
pF1KB9 MAEPFLSEYQHQPQTSNCTGAAAVQEELNPERPPGAEERVPEEDSRWQSRAFPQLGGRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAEPFLSEYQHQPQTSNCTGAAAVQEELNPERPPGAEERVPEEDSRWQSRAFPQLGGRPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 FMEEGGEEDGGSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FMEEGGEEDGGSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSR
250 260 270 280 290 300
310 320 330 340 350
pF1KB9 MEDENNRLRLESKRLGGDDARVRELELELDRLRAENLQLLTENELHRQQERAPLSKFGD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEDENNRLRLESKRLGGDDARVRELELELDRLRAENLQLLTENELHRQQERAPLSKFGD
310 320 330 340 350
>>XP_016879656 (OMIM: 615695) PREDICTED: protein HEXIM2 (286 aa)
initn: 749 init1: 396 opt: 454 Z-score: 342.1 bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)
50 60 70 80 90
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
: :: :: : : : :. ..
XP_016 MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
10 20 30
100 110 120 130 140 150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
.::..: ..: : : :: .:.. . .: :: . . :..
XP_016 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
40 50 60 70 80
160 170 180 190 200 210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
:::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
XP_016 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
.:.: :::.: . . : :. : : : ::: : .:: ..:::::
XP_016 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
150 160 170 180 190
280 290 300 310 320
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
:::.::::::. :::::...:::::: ::. :.:. ::. . : .. : :.:: :.
XP_016 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
200 210 220 230 240 250
330 340 350
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
.:::.:: .: ::..
XP_016 QRLRTENQRLRQENQMWNREGCRCDEEPGT
260 270 280
>>XP_016879657 (OMIM: 615695) PREDICTED: protein HEXIM2 (286 aa)
initn: 749 init1: 396 opt: 454 Z-score: 342.1 bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)
50 60 70 80 90
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
: :: :: : : : :. ..
XP_016 MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
10 20 30
100 110 120 130 140 150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
.::..: ..: : : :: .:.. . .: :: . . :..
XP_016 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
40 50 60 70 80
160 170 180 190 200 210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
:::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
XP_016 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
.:.: :::.: . . : :. : : : ::: : .:: ..:::::
XP_016 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
150 160 170 180 190
280 290 300 310 320
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
:::.::::::. :::::...:::::: ::. :.:. ::. . : .. : :.:: :.
XP_016 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
200 210 220 230 240 250
330 340 350
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
.:::.:: .: ::..
XP_016 QRLRTENQRLRQENQMWNREGCRCDEEPGT
260 270 280
>>NP_001290369 (OMIM: 615695) protein HEXIM2 isoform 1 [ (286 aa)
initn: 749 init1: 396 opt: 454 Z-score: 342.1 bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)
50 60 70 80 90
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
: :: :: : : : :. ..
NP_001 MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
10 20 30
100 110 120 130 140 150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
.::..: ..: : : :: .:.. . .: :: . . :..
NP_001 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
40 50 60 70 80
160 170 180 190 200 210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
:::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
NP_001 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
.:.: :::.: . . : :. : : : ::: : .:: ..:::::
NP_001 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
150 160 170 180 190
280 290 300 310 320
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
:::.::::::. :::::...:::::: ::. :.:. ::. . : .. : :.:: :.
NP_001 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
200 210 220 230 240 250
330 340 350
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
.:::.:: .: ::..
NP_001 QRLRTENQRLRQENQMWNREGCRCDEEPGT
260 270 280
>>NP_001290370 (OMIM: 615695) protein HEXIM2 isoform 1 [ (286 aa)
initn: 749 init1: 396 opt: 454 Z-score: 342.1 bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)
50 60 70 80 90
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
: :: :: : : : :. ..
NP_001 MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
10 20 30
100 110 120 130 140 150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
.::..: ..: : : :: .:.. . .: :: . . :..
NP_001 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
40 50 60 70 80
160 170 180 190 200 210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
:::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
NP_001 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
.:.: :::.: . . : :. : : : ::: : .:: ..:::::
NP_001 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
150 160 170 180 190
280 290 300 310 320
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
:::.::::::. :::::...:::::: ::. :.:. ::. . : .. : :.:: :.
NP_001 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
200 210 220 230 240 250
330 340 350
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
.:::.:: .: ::..
NP_001 QRLRTENQRLRQENQMWNREGCRCDEEPGT
260 270 280
>>XP_016879658 (OMIM: 615695) PREDICTED: protein HEXIM2 (286 aa)
initn: 749 init1: 396 opt: 454 Z-score: 342.1 bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)
50 60 70 80 90
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
: :: :: : : : :. ..
XP_016 MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
10 20 30
100 110 120 130 140 150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
.::..: ..: : : :: .:.. . .: :: . . :..
XP_016 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
40 50 60 70 80
160 170 180 190 200 210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
:::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
XP_016 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
.:.: :::.: . . : :. : : : ::: : .:: ..:::::
XP_016 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
150 160 170 180 190
280 290 300 310 320
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
:::.::::::. :::::...:::::: ::. :.:. ::. . : .. : :.:: :.
XP_016 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
200 210 220 230 240 250
330 340 350
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
.:::.:: .: ::..
XP_016 QRLRTENQRLRQENQMWNREGCRCDEEPGT
260 270 280
>>NP_001290368 (OMIM: 615695) protein HEXIM2 isoform 1 [ (286 aa)
initn: 749 init1: 396 opt: 454 Z-score: 342.1 bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)
50 60 70 80 90
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
: :: :: : : : :. ..
NP_001 MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
10 20 30
100 110 120 130 140 150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
.::..: ..: : : :: .:.. . .: :: . . :..
NP_001 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
40 50 60 70 80
160 170 180 190 200 210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
:::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
NP_001 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
.:.: :::.: . . : :. : : : ::: : .:: ..:::::
NP_001 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
150 160 170 180 190
280 290 300 310 320
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
:::.::::::. :::::...:::::: ::. :.:. ::. . : .. : :.:: :.
NP_001 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
200 210 220 230 240 250
330 340 350
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
.:::.:: .: ::..
NP_001 QRLRTENQRLRQENQMWNREGCRCDEEPGT
260 270 280
>>NP_001290373 (OMIM: 615695) protein HEXIM2 isoform 1 [ (286 aa)
initn: 749 init1: 396 opt: 454 Z-score: 342.1 bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)
50 60 70 80 90
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
: :: :: : : : :. ..
NP_001 MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
10 20 30
100 110 120 130 140 150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
.::..: ..: : : :: .:.. . .: :: . . :..
NP_001 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
40 50 60 70 80
160 170 180 190 200 210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
:::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
NP_001 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
.:.: :::.: . . : :. : : : ::: : .:: ..:::::
NP_001 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
150 160 170 180 190
280 290 300 310 320
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
:::.::::::. :::::...:::::: ::. :.:. ::. . : .. : :.:: :.
NP_001 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
200 210 220 230 240 250
330 340 350
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
.:::.:: .: ::..
NP_001 QRLRTENQRLRQENQMWNREGCRCDEEPGT
260 270 280
>>XP_011522608 (OMIM: 615695) PREDICTED: protein HEXIM2 (286 aa)
initn: 749 init1: 396 opt: 454 Z-score: 342.1 bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)
50 60 70 80 90
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
: :: :: : : : :. ..
XP_011 MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
10 20 30
100 110 120 130 140 150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
.::..: ..: : : :: .:.. . .: :: . . :..
XP_011 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
40 50 60 70 80
160 170 180 190 200 210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
:::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
XP_011 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
.:.: :::.: . . : :. : : : ::: : .:: ..:::::
XP_011 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
150 160 170 180 190
280 290 300 310 320
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
:::.::::::. :::::...:::::: ::. :.:. ::. . : .. : :.:: :.
XP_011 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
200 210 220 230 240 250
330 340 350
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
.:::.:: .: ::..
XP_011 QRLRTENQRLRQENQMWNREGCRCDEEPGT
260 270 280
>>NP_001290372 (OMIM: 615695) protein HEXIM2 isoform 1 [ (286 aa)
initn: 749 init1: 396 opt: 454 Z-score: 342.1 bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)
50 60 70 80 90
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
: :: :: : : : :. ..
NP_001 MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
10 20 30
100 110 120 130 140 150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
.::..: ..: : : :: .:.. . .: :: . . :..
NP_001 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
40 50 60 70 80
160 170 180 190 200 210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
:::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
NP_001 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
.:.: :::.: . . : :. : : : ::: : .:: ..:::::
NP_001 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
150 160 170 180 190
280 290 300 310 320
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
:::.::::::. :::::...:::::: ::. :.:. ::. . : .. : :.:: :.
NP_001 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
200 210 220 230 240 250
330 340 350
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
.:::.:: .: ::..
NP_001 QRLRTENQRLRQENQMWNREGCRCDEEPGT
260 270 280
359 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:38:34 2016 done: Fri Nov 4 17:38:35 2016
Total Scan time: 9.480 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]