FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9588, 233 aa
  1>>>pF1KB9588 233 - 233 aa - 233 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8623+/-0.000642; mu= 13.3879+/- 0.040
 mean_var=89.8208+/-18.596, 0's: 0 Z-trim(113.9): 5  B-trim: 1359 in 2/51
 Lambda= 0.135327
 statistics sampled from 14454 (14456) to 14454 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.444), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS4334.1 MED7 gene_id:9443|Hs108|chr5            ( 233) 1583 317.9 3.5e-87


>>CCDS4334.1 MED7 gene_id:9443|Hs108|chr5                 (233 aa)
 initn: 1583 init1: 1583 opt: 1583  Z-score: 1678.8  bits: 317.9 E(32554): 3.5e-87
Smith-Waterman score: 1583; 99.6% identity (100.0% similar) in 233 aa overlap (1-233:1-233)

               10        20        30        40        50        60
pF1KB9 MGEPQQVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGEPQQVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SQGIERLHPMQFDHEKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVH
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 HLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPDDLPHSEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPDDLPHSEA
              130       140       150       160       170       180

              190       200       210       220       230   
pF1KB9 GMRVKTEPMDADDSNNCTGQNEHQRENSGHRRDQIIEKDAALCVLIDEMNERP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GMRVKTEPMDADDSNNCTGQNEHQRENSGHRRDQIIEKDAALCVLIDEMNERP
              190       200       210       220       230   




233 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:32:27 2016 done: Fri Nov  4 17:32:27 2016
 Total Scan time:  2.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]