FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9586, 150 aa
  1>>>pF1KB9586 150 - 150 aa - 150 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4226+/-0.00069; mu= 10.2008+/- 0.042
 mean_var=127.3796+/-25.138, 0's: 0 Z-trim(114.7): 25  B-trim: 0 in 0/52
 Lambda= 0.113638
 statistics sampled from 15261 (15285) to 15261 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.47), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS12432.1 CEBPG gene_id:1054|Hs108|chr19         ( 150)  953 165.7 9.8e-42


>>CCDS12432.1 CEBPG gene_id:1054|Hs108|chr19              (150 aa)
 initn: 953 init1: 953 opt: 953  Z-score: 862.7  bits: 165.7 E(32554): 9.8e-42
Smith-Waterman score: 953; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KB9 MSKISQQNSTPGVNGISVIHTQAHASGLQQVPQLVPAGPGGGGKAVAPSKQSKKSSPMDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSKISQQNSTPGVNGISVIHTQAHASGLQQVPQLVPAGPGGGGKAVAPSKQSKKSSPMDR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 NSDEYRQRRERNNMAVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIKLLTKELSVLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NSDEYRQRRERNNMAVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIKLLTKELSVLKD
               70        80        90       100       110       120

              130       140       150
pF1KB9 LFLEHAHNLADNVQSISTENTTADGDNAGQ
       ::::::::::::::::::::::::::::::
CCDS12 LFLEHAHNLADNVQSISTENTTADGDNAGQ
              130       140       150




150 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:30:44 2016 done: Fri Nov  4 17:30:45 2016
 Total Scan time:  1.590 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]