FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9581, 354 aa
  1>>>pF1KB9581 354 - 354 aa - 354 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7850+/-0.000771; mu= 3.4172+/- 0.047
 mean_var=211.8434+/-42.943, 0's: 0 Z-trim(116.7): 39  B-trim: 988 in 1/50
 Lambda= 0.088118
 statistics sampled from 17289 (17328) to 17289 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.532), width:  16
 Scan time:  3.430

The best scores are:                                      opt bits E(32554)
CCDS3638.1 ATOH1 gene_id:474|Hs108|chr4            ( 354) 2412 318.3 6.1e-87


>>CCDS3638.1 ATOH1 gene_id:474|Hs108|chr4                 (354 aa)
 initn: 2412 init1: 2412 opt: 2412  Z-score: 1674.3  bits: 318.3 E(32554): 6.1e-87
Smith-Waterman score: 2412; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)

               10        20        30        40        50        60
pF1KB9 MSRLLHAEEWAEVKELGDHHRQPQPHHLPQPPPPPQPPATLQAREHPVYPPELSLLDSTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MSRLLHAEEWAEVKELGDHHRQPQPHHLPQPPPPPQPPATLQAREHPVYPPELSLLDSTD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PRAWLAPTLQGICTARAAQYLLHSPELGASEAAAPRDEVDGRGELVRRSSGGASSSKSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 PRAWLAPTLQGICTARAAQYLLHSPELGASEAAAPRDEVDGRGELVRRSSGGASSSKSPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PVKVREQLCKLKGGVVVDELGCSRQRAPSSKQVNGVQKQRRLAANARERRRMHGLNHAFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 PVKVREQLCKLKGGVVVDELGCSRQRAPSSKQVNGVQKQRRLAANARERRRMHGLNHAFD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQTPSGGEQPPPPPASCKSDHHHLRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 QLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQTPSGGEQPPPPPASCKSDHHHLRT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 AASYEGGAGNATAAGAQQASGGSQRPTPPGSCRTRFSAPASAGGYSVQLDALHFSTFEDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 AASYEGGAGNATAAGAQQASGGSQRPTPPGSCRTRFSAPASAGGYSVQLDALHFSTFEDS
              250       260       270       280       290       300

              310       320       330       340       350    
pF1KB9 ALTAMMAQKNLSPSLPGSILQPVQEENSKTSPRSHRSDGEFSPHSHYSDSDEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 ALTAMMAQKNLSPSLPGSILQPVQEENSKTSPRSHRSDGEFSPHSHYSDSDEAS
              310       320       330       340       350    




354 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:29:05 2016 done: Fri Nov  4 17:29:05 2016
 Total Scan time:  3.430 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]