FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9578, 237 aa
  1>>>pF1KB9578 237 - 237 aa - 237 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8478+/-0.000829; mu= 5.3570+/- 0.050
 mean_var=203.5080+/-40.015, 0's: 0 Z-trim(115.5): 41  B-trim: 126 in 1/52
 Lambda= 0.089905
 statistics sampled from 15995 (16035) to 15995 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.493), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS31886.1 ASCL1 gene_id:429|Hs108|chr12          ( 236) 1549 212.3 2.3e-55
CCDS7732.1 ASCL2 gene_id:430|Hs108|chr11           ( 193)  423 66.1 1.8e-11


>>CCDS31886.1 ASCL1 gene_id:429|Hs108|chr12               (236 aa)
 initn: 1309 init1: 1309 opt: 1549  Z-score: 1107.5  bits: 212.3 E(32554): 2.3e-55
Smith-Waterman score: 1549; 99.6% identity (99.6% similar) in 237 aa overlap (1-237:1-236)

               10        20        30        40        50        60
pF1KB9 MESSAKMESGGAGQQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MESSAKMESGGAGQQPQPQPQQPFLPPAACFFATAAAAAAAAAAAAAQSAQQQQQQQQQQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QQ-APQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAA
                70        80        90       100       110         

              130       140       150       160       170       180
pF1KB9 VARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDA
     120       130       140       150       160       170         

              190       200       210       220       230       
pF1KB9 VSAAFQAGVLSPTISPNYSNDLNSMAGSPVSSYSSDEGSYDPLSPEEQELLDFTNWF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VSAAFQAGVLSPTISPNYSNDLNSMAGSPVSSYSSDEGSYDPLSPEEQELLDFTNWF
     180       190       200       210       220       230      

>>CCDS7732.1 ASCL2 gene_id:430|Hs108|chr11                (193 aa)
 initn: 517 init1: 350 opt: 423  Z-score: 319.3  bits: 66.1 E(32554): 1.8e-11
Smith-Waterman score: 472; 52.0% identity (68.0% similar) in 175 aa overlap (89-237:23-190)

       60        70        80        90       100           110    
pF1KB9 QQQQQAPQLRPAADGQPSGGGHKSAPKQVKRQRSSSPELMRCKRR----LNFSGFGYSLP
                                     :.: .::::.::.::       .: :    
CCDS77         MDGGTLPRSAPPAPPVPVGCAARRRPASPELLRCSRRRRPATAETGGG----
                       10        20        30        40            

          120       130       140       150       160       170    
pF1KB9 QQQPAAVARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQL
           ::::::::::::::::::::: .::.:::.:.:.::.:::::::::::::::::.:
CCDS77 ---AAAVARRNERERNRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRL
          50        60        70        80        90       100     

          180           190                   200            210   
pF1KB9 LDEHDAVSAAFQAGV----LSPTI------------SPNYSNDL-----NSMAGSPVSSY
       : :::::  :. .:.    . :.             ::. ...      .:  ::: :.:
CCDS77 LAEHDAVRNALAGGLRPQAVRPSAPRGPPGTTPVAASPSRASSSPGRGGSSEPGSPRSAY
         110       120       130       140       150       160     

            220       230          
pF1KB9 SSDE-GSYDPLSPEEQELLDFTNWF   
       :::. :    ::: :.:::::..:.   
CCDS77 SSDDSGCEGALSPAERELLDFSSWLGGY
         170       180       190   




237 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:27:27 2016 done: Fri Nov  4 17:27:28 2016
 Total Scan time:  2.520 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]