FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9575, 607 aa
  1>>>pF1KB9575 607 - 607 aa - 607 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9383+/-0.00102; mu= 16.0173+/- 0.061
 mean_var=72.5307+/-14.574, 0's: 0 Z-trim(103.8): 18  B-trim: 0 in 0/50
 Lambda= 0.150596
 statistics sampled from 7603 (7606) to 7603 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.59), E-opt: 0.2 (0.234), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS13960.1 EIF3L gene_id:51386|Hs108|chr22        ( 564) 3772 829.2       0
CCDS56230.1 EIF3L gene_id:51386|Hs108|chr22        ( 516) 2446 541.1 1.3e-153


>>CCDS13960.1 EIF3L gene_id:51386|Hs108|chr22             (564 aa)
 initn: 3772 init1: 3772 opt: 3772  Z-score: 4427.4  bits: 829.2 E(32554):    0
Smith-Waterman score: 3772; 100.0% identity (100.0% similar) in 564 aa overlap (44-607:1-564)

            20        30        40        50        60        70   
pF1KB9 GPSGAELPASGRRRGPLISLFPAVLASEAAMSYPADDYESEAAYDPYAYPSDYDMHTGDP
                                     ::::::::::::::::::::::::::::::
CCDS13                               MSYPADDYESEAAYDPYAYPSDYDMHTGDP
                                             10        20        30

            80        90       100       110       120       130   
pF1KB9 KQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYE
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KB9 IQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSL
              100       110       120       130       140       150

           200       210       220       230       240       250   
pF1KB9 EQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEE
              160       170       180       190       200       210

           260       270       280       290       300       310   
pF1KB9 EIDFLRSNPKIWNVHSVLNVLHSLVDKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EIDFLRSNPKIWNVHSVLNVLHSLVDKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLG
              220       230       240       250       260       270

           320       330       340       350       360       370   
pF1KB9 YFSLVGLLRLHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YFSLVGLLRLHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQ
              280       290       300       310       320       330

           380       390       400       410       420       430   
pF1KB9 DAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQL
              340       350       360       370       380       390

           440       450       460       470       480       490   
pF1KB9 REKYGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 REKYGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDE
              400       410       420       430       440       450

           500       510       520       530       540       550   
pF1KB9 VQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALD
              460       470       480       490       500       510

           560       570       580       590       600       
pF1KB9 GEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKMGQRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKMGQRP
              520       530       540       550       560    

>>CCDS56230.1 EIF3L gene_id:51386|Hs108|chr22             (516 aa)
 initn: 3406 init1: 2446 opt: 2446  Z-score: 2871.0  bits: 541.1 E(32554): 1.3e-153
Smith-Waterman score: 3314; 91.5% identity (91.5% similar) in 564 aa overlap (44-607:1-516)

            20        30        40        50        60        70   
pF1KB9 GPSGAELPASGRRRGPLISLFPAVLASEAAMSYPADDYESEAAYDPYAYPSDYDMHTGDP
                                     ::::::::::::::::::::::::::::::
CCDS56                               MSYPADDYESEAAYDPYAYPSDYDMHTGDP
                                             10        20        30

            80        90       100       110       120       130   
pF1KB9 KQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYE
               40        50        60        70        80        90

           140       150       160       170       180       190   
pF1KB9 IQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS56 IQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVS-----
              100       110       120       130       140          

           200       210       220       230       240       250   
pF1KB9 EQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEE
                                                  :::::::::::::::::
CCDS56 -------------------------------------------FQSFSQYRCKTAKKSEE
                                                    150       160  

           260       270       280       290       300       310   
pF1KB9 EIDFLRSNPKIWNVHSVLNVLHSLVDKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EIDFLRSNPKIWNVHSVLNVLHSLVDKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLG
            170       180       190       200       210       220  

           320       330       340       350       360       370   
pF1KB9 YFSLVGLLRLHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YFSLVGLLRLHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQ
            230       240       250       260       270       280  

           380       390       400       410       420       430   
pF1KB9 DAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQL
            290       300       310       320       330       340  

           440       450       460       470       480       490   
pF1KB9 REKYGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 REKYGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDE
            350       360       370       380       390       400  

           500       510       520       530       540       550   
pF1KB9 VQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALD
            410       420       430       440       450       460  

           560       570       580       590       600       
pF1KB9 GEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKMGQRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKMGQRP
            470       480       490       500       510      




607 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:26:13 2016 done: Fri Nov  4 17:26:14 2016
 Total Scan time:  2.690 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]