FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9573, 375 aa
  1>>>pF1KB9573 375 - 375 aa - 375 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.2705+/-0.000383; mu= -4.0942+/- 0.024
 mean_var=307.9530+/-61.542, 0's: 0 Z-trim(122.7): 7  B-trim: 376 in 1/56
 Lambda= 0.073086
 statistics sampled from 41367 (41375) to 41367 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.485), width:  16
 Scan time:  9.840

The best scores are:                                      opt bits E(85289)
NP_003463 (OMIM: 125264) protein DEK isoform 1 [Ho ( 375) 2379 263.8 4.5e-70
XP_016866762 (OMIM: 125264) PREDICTED: protein DEK ( 380) 2365 262.4 1.3e-69
NP_001128181 (OMIM: 125264) protein DEK isoform 2  ( 341) 1865 209.6 8.7e-54


>>NP_003463 (OMIM: 125264) protein DEK isoform 1 [Homo s  (375 aa)
 initn: 2379 init1: 2379 opt: 2379  Z-score: 1378.9  bits: 263.8 E(85289): 4.5e-70
Smith-Waterman score: 2379; 99.5% identity (100.0% similar) in 375 aa overlap (1-375:1-375)

               10        20        30        40        50        60
pF1KB9 MSASAPAAEGEGTPTQPASEKEPEMPGPREESEEEEDEDDEEEEEEEKEKSLIVEGKREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSASAPAAEGEGTPTQPASEKEPEMPGPREESEEEEDEDDEEEEEEEKEKSLIVEGKREK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KKVERLTMQVSSLQREPFTIAQGKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KKVERLTMQVSSLQREPFTIAQGKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SSLKKNVGQFSGFPFEKGSAQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRIL
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_003 SSLKKNVGQFSGFPFEKGSVQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NFLMHPKPSGKPLPKSKKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NFLMHPKPSGKPLPKSKKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 EESSEDEDKESEEEPPKKTAKREKPKQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKE
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EESSDDEDKESEEEPPKKTAKREKPKQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SESEDSSDDEPLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SESEDSSDDEPLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT
              310       320       330       340       350       360

              370     
pF1KB9 ERKDFIKTTVKELIS
       :::::::::::::::
NP_003 ERKDFIKTTVKELIS
              370     

>>XP_016866762 (OMIM: 125264) PREDICTED: protein DEK iso  (380 aa)
 initn: 2594 init1: 2365 opt: 2365  Z-score: 1370.9  bits: 262.4 E(85289): 1.3e-69
Smith-Waterman score: 2365; 99.2% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KB9 MSASAPAAEGEGTPTQPASEKEPEMPGPREESEEEEDEDDEEEEEEEKEKSLIVEGKREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSASAPAAEGEGTPTQPASEKEPEMPGPREESEEEEDEDDEEEEEEEKEKSLIVEGKREK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KKVERLTMQVSSLQREPFTIAQGKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKVERLTMQVSSLQREPFTIAQGKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SSLKKNVGQFSGFPFEKGSAQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRIL
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
XP_016 SSLKKNVGQFSGFPFEKGSVQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NFLMHPKPSGKPLPKSKKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFLMHPKPSGKPLPKSKKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 EESSEDEDKESEEEPPKKTAKREKPKQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKE
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EESSDDEDKESEEEPPKKTAKREKPKQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SESEDSSDDEPLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SESEDSSDDEPLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT
              310       320       330       340       350       360

              370          
pF1KB9 ERKDFIKTTVKELIS     
       ::::::::::::.       
XP_016 ERKDFIKTTVKEVNISVFQV
              370       380

>>NP_001128181 (OMIM: 125264) protein DEK isoform 2 [Hom  (341 aa)
 initn: 1859 init1: 1859 opt: 1865  Z-score: 1086.6  bits: 209.6 E(85289): 8.7e-54
Smith-Waterman score: 2096; 90.4% identity (90.9% similar) in 375 aa overlap (1-375:1-341)

               10        20        30        40        50        60
pF1KB9 MSASAPAAEGEGTPTQPASEKEPEMPGPREESEEEEDEDDEEEEEEEKEKSLIVEGKREK
       ::::::::::::::::::::::::::::::::::::::::::::::::            
NP_001 MSASAPAAEGEGTPTQPASEKEPEMPGPREESEEEEDEDDEEEEEEEK------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB9 KKVERLTMQVSSLQREPFTIAQGKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTV
                             ::::::::::::::::::::::::::::::::::::::
NP_001 ----------------------GKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTV
                             50        60        70        80      

              130       140       150       160       170       180
pF1KB9 SSLKKNVGQFSGFPFEKGSAQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRIL
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_001 SSLKKNVGQFSGFPFEKGSVQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRIL
         90       100       110       120       130       140      

              190       200       210       220       230       240
pF1KB9 NFLMHPKPSGKPLPKSKKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFLMHPKPSGKPLPKSKKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNK
        150       160       170       180       190       200      

              250       260       270       280       290       300
pF1KB9 EESSEDEDKESEEEPPKKTAKREKPKQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKE
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EESSDDEDKESEEEPPKKTAKREKPKQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKE
        210       220       230       240       250       260      

              310       320       330       340       350       360
pF1KB9 SESEDSSDDEPLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SESEDSSDDEPLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT
        270       280       290       300       310       320      

              370     
pF1KB9 ERKDFIKTTVKELIS
       :::::::::::::::
NP_001 ERKDFIKTTVKELIS
        330       340 




375 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:25:41 2016 done: Fri Nov  4 17:25:42 2016
 Total Scan time:  9.840 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]