FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9571, 318 aa
  1>>>pF1KB9571 318 - 318 aa - 318 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2138+/-0.000409; mu= 2.9880+/- 0.025
 mean_var=189.2019+/-40.186, 0's: 0 Z-trim(117.6): 125  B-trim: 889 in 1/54
 Lambda= 0.093242
 statistics sampled from 29637 (29780) to 29637 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.349), width:  16
 Scan time:  7.190

The best scores are:                                      opt bits E(85289)
NP_068351 (OMIM: 189903) nuclear transcription fac ( 318) 2054 288.5 1.2e-77
NP_002496 (OMIM: 189903) nuclear transcription fac ( 347) 1917 270.1 4.6e-72


>>NP_068351 (OMIM: 189903) nuclear transcription factor   (318 aa)
 initn: 2054 init1: 2054 opt: 2054  Z-score: 1514.9  bits: 288.5 E(85289): 1.2e-77
Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KB9 MEQYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MEQYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 IMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 QQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 QQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGAN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 TNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEEEPLYVNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 TNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEEEPLYVNA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 KQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 KQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPHM
              250       260       270       280       290       300

              310        
pF1KB9 QDPNQADEEAMTQIIRVS
       ::::::::::::::::::
NP_068 QDPNQADEEAMTQIIRVS
              310        

>>NP_002496 (OMIM: 189903) nuclear transcription factor   (347 aa)
 initn: 1909 init1: 1909 opt: 1917  Z-score: 1414.8  bits: 270.1 E(85289): 4.6e-72
Smith-Waterman score: 1986; 91.6% identity (91.6% similar) in 347 aa overlap (1-318:1-347)

               10        20                                     30 
pF1KB9 MEQYTANSNSSTEQIVVQAGQIQQQ-----------------------------VQGQPL
       :::::::::::::::::::::::::                             ::::::
NP_002 MEQYTANSNSSTEQIVVQAGQIQQQQQGGVTAVQLQTEAQVASASGQQVQTLQVVQGQPL
               10        20        30        40        50        60

              40        50        60        70        80        90 
pF1KB9 MVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAV
               70        80        90       100       110       120

             100       110       120       130       140       150 
pF1KB9 QVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTIL
              130       140       150       160       170       180

             160       170       180       190       200       210 
pF1KB9 QQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMV
              190       200       210       220       230       240

             220       230       240       250       260       270 
pF1KB9 PGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLH
              250       260       270       280       290       300

             280       290       300       310        
pF1KB9 ESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS
              310       320       330       340       




318 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:23:45 2016 done: Fri Nov  4 17:23:46 2016
 Total Scan time:  7.190 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]