FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9571, 318 aa
  1>>>pF1KB9571 318 - 318 aa - 318 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2030+/-0.000975; mu= 2.4055+/- 0.058
 mean_var=148.0215+/-30.250, 0's: 0 Z-trim(109.8): 58  B-trim: 270 in 1/50
 Lambda= 0.105417
 statistics sampled from 11106 (11157) to 11106 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.343), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS4850.1 NFYA gene_id:4800|Hs108|chr6            ( 318) 2054 323.8 1.1e-88
CCDS4849.1 NFYA gene_id:4800|Hs108|chr6            ( 347) 1917 303.0 2.2e-82


>>CCDS4850.1 NFYA gene_id:4800|Hs108|chr6                 (318 aa)
 initn: 2054 init1: 2054 opt: 2054  Z-score: 1705.8  bits: 323.8 E(32554): 1.1e-88
Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KB9 MEQYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MEQYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 IMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 QQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGAN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 TNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEEEPLYVNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEEEPLYVNA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 KQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPHM
              250       260       270       280       290       300

              310        
pF1KB9 QDPNQADEEAMTQIIRVS
       ::::::::::::::::::
CCDS48 QDPNQADEEAMTQIIRVS
              310        

>>CCDS4849.1 NFYA gene_id:4800|Hs108|chr6                 (347 aa)
 initn: 1909 init1: 1909 opt: 1917  Z-score: 1592.6  bits: 303.0 E(32554): 2.2e-82
Smith-Waterman score: 1986; 91.6% identity (91.6% similar) in 347 aa overlap (1-318:1-347)

               10        20                                     30 
pF1KB9 MEQYTANSNSSTEQIVVQAGQIQQQ-----------------------------VQGQPL
       :::::::::::::::::::::::::                             ::::::
CCDS48 MEQYTANSNSSTEQIVVQAGQIQQQQQGGVTAVQLQTEAQVASASGQQVQTLQVVQGQPL
               10        20        30        40        50        60

              40        50        60        70        80        90 
pF1KB9 MVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAV
               70        80        90       100       110       120

             100       110       120       130       140       150 
pF1KB9 QVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTIL
              130       140       150       160       170       180

             160       170       180       190       200       210 
pF1KB9 QQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMV
              190       200       210       220       230       240

             220       230       240       250       260       270 
pF1KB9 PGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 PGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLH
              250       260       270       280       290       300

             280       290       300       310        
pF1KB9 ESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS
              310       320       330       340       




318 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:23:44 2016 done: Fri Nov  4 17:23:45 2016
 Total Scan time:  2.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]