FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9564, 243 aa
  1>>>pF1KB9564 243 - 243 aa - 243 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2424+/-0.000706; mu= 15.1370+/- 0.042
 mean_var=66.5762+/-13.671, 0's: 0 Z-trim(109.6): 8  B-trim: 57 in 1/50
 Lambda= 0.157186
 statistics sampled from 11007 (11010) to 11007 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.338), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS7996.1 TMEM109 gene_id:79073|Hs108|chr11       ( 243) 1530 355.2 2.2e-98


>>CCDS7996.1 TMEM109 gene_id:79073|Hs108|chr11            (243 aa)
 initn: 1530 init1: 1530 opt: 1530  Z-score: 1879.7  bits: 355.2 E(32554): 2.2e-98
Smith-Waterman score: 1530; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KB9 MAASSISSPWGKHVFKAILMVLVALILLHSALAQSRRDFAPPGQQKREAPVDVLTQIGRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MAASSISSPWGKHVFKAILMVLVALILLHSALAQSRRDFAPPGQQKREAPVDVLTQIGRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VRGTLDAWIGPETMHLVSESSSQVLWAISSAISVAFFALSGIAAQLLNALGLAGDYLAQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 VRGTLDAWIGPETMHLVSESSSQVLWAISSAISVAFFALSGIAAQLLNALGLAGDYLAQG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LKLSPGQVQTFLLWGAGALVVYWLLSLLLGLVLALLGRILWGLKLVIFLAGFVALMRSVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LKLSPGQVQTFLLWGAGALVVYWLLSLLLGLVLALLGRILWGLKLVIFLAGFVALMRSVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DPSTRALLLLALLILYALLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 DPSTRALLLLALLILYALLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSV
              190       200       210       220       230       240

          
pF1KB9 EEE
       :::
CCDS79 EEE
          




243 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:20:21 2016 done: Fri Nov  4 17:20:22 2016
 Total Scan time:  2.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]