Result of FASTA (ccds) for
pF1KB9563
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9563, 2322 aa
1>>>pF1KB9563 2322 - 2322 aa - 2322 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5840+/-0.000985; mu= 20.4066+/- 0.060
mean_var=111.0755+/-22.059, 0's: 0 Z-trim(107.5): 37 B-trim: 0 in 0/54
Lambda= 0.121693
statistics sampled from 9562 (9591) to 9562 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.295), width: 16
Scan time: 6.540
The best scores are: opt bits E(32554)
CCDS10284.1 CSPG4 gene_id:1464|Hs108|chr15 (2322) 15395 2715.3 0
>>CCDS10284.1 CSPG4 gene_id:1464|Hs108|chr15 (2322 aa)
initn: 15395 init1: 15395 opt: 15395 Z-score: 14599.1 bits: 2715.3 E(32554): 0
Smith-Waterman score: 15395; 100.0% identity (100.0% similar) in 2322 aa overlap (1-2322:1-2322)
10 20 30 40 50 60
pF1KB9 MQSGPRPPLPAPGLALALTLTMLARLASAASFFGENHLEVPVATALTDIDLQLQFSTSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MQSGPRPPLPAPGLALALTLTMLARLASAASFFGENHLEVPVATALTDIDLQLQFSTSQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EALLLLAAGPADHLLLQLYSGRLQVRLVLGQEELRLQTPAETLLSDSIPHTVVLTVVEGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EALLLLAAGPADHLLLQLYSGRLQVRLVLGQEELRLQTPAETLLSDSIPHTVVLTVVEGW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ATLSVDGFLNASSAVPGAPLEVPYGLFVGGTGTLGLPYLRGTSRPLRGCLHAATLNGRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ATLSVDGFLNASSAVPGAPLEVPYGLFVGGTGTLGLPYLRGTSRPLRGCLHAATLNGRSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LRPLTPDVHEGCAEEFSASDDVALGFSGPHSLAAFPAWGTQDEGTLEFTLTTQSRQAPLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LRPLTPDVHEGCAEEFSASDDVALGFSGPHSLAAFPAWGTQDEGTLEFTLTTQSRQAPLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 FQAGGRRGDFIYVDIFEGHLRAVVEKGQGTVLLHNSVPVADGQPHEVSVHINAHRLEISV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FQAGGRRGDFIYVDIFEGHLRAVVEKGQGTVLLHNSVPVADGQPHEVSVHINAHRLEISV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 DQYPTHTSNRGVLSYLEPRGSLLLGGLDAEASRHLQEHRLGLTPEATNASLLGCMEDLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DQYPTHTSNRGVLSYLEPRGSLLLGGLDAEASRHLQEHRLGLTPEATNASLLGCMEDLSV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 NGQRRGLREALLTRNMAAGCRLEEEEYEDDAYGHYEAFSTLAPEAWPAMELPEPCVPEPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NGQRRGLREALLTRNMAAGCRLEEEEYEDDAYGHYEAFSTLAPEAWPAMELPEPCVPEPG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 LPPVFANFTQLLTISPLVVAEGGTAWLEWRHVQPTLDLMEAELRKSQVLFSVTRGARHGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPPVFANFTQLLTISPLVVAEGGTAWLEWRHVQPTLDLMEAELRKSQVLFSVTRGARHGE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 LELDIPGAQARKMFTLLDVVNRKARFIHDGSEDTSDQLVLEVSVTARVPMPSCLRRGQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LELDIPGAQARKMFTLLDVVNRKARFIHDGSEDTSDQLVLEVSVTARVPMPSCLRRGQTY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 LLPIQVNPVNDPPHIIFPHGSLMVILEHTQKPLGPEVFQAYDPDSACEGLTFQVLGTSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LLPIQVNPVNDPPHIIFPHGSLMVILEHTQKPLGPEVFQAYDPDSACEGLTFQVLGTSSG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 LPVERRDQPGEPATEFSCRELEAGSLVYVHRGGPAQDLTFRVSDGLQASPPATLKVVAIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPVERRDQPGEPATEFSCRELEAGSLVYVHRGGPAQDLTFRVSDGLQASPPATLKVVAIR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 PAIQIHRSTGLRLAQGSAMPILPANLSVETNAVGQDVSVLFRVTGALQFGELQKQGAGGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PAIQIHRSTGLRLAQGSAMPILPANLSVETNAVGQDVSVLFRVTGALQFGELQKQGAGGV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 EGAEWWATQAFHQRDVEQGRVRYLSTDPQHHAYDTVENLALEVQVGQEILSNLSFPVTIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EGAEWWATQAFHQRDVEQGRVRYLSTDPQHHAYDTVENLALEVQVGQEILSNLSFPVTIQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 RATVWMLRLEPLHTQNTQQETLTTAHLEATLEEAGPSPPTFHYEVVQAPRKGNLQLQGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RATVWMLRLEPLHTQNTQQETLTTAHLEATLEEAGPSPPTFHYEVVQAPRKGNLQLQGTR
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 LSDGQGFTQDDIQAGRVTYGATARASEAVEDTFRFRVTAPPYFSPLYTFPIHIGGDPDAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LSDGQGFTQDDIQAGRVTYGATARASEAVEDTFRFRVTAPPYFSPLYTFPIHIGGDPDAP
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 VLTNVLLVVPEGGEGVLSADHLFVKSLNSASYLYEVMERPRHGRLAWRGTQDKTTMVTSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VLTNVLLVVPEGGEGVLSADHLFVKSLNSASYLYEVMERPRHGRLAWRGTQDKTTMVTSF
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 TNEDLLRGRLVYQHDDSETTEDDIPFVATRQGESSGDMAWEEVRGVFRVAIQPVNDHAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TNEDLLRGRLVYQHDDSETTEDDIPFVATRQGESSGDMAWEEVRGVFRVAIQPVNDHAPV
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB9 QTISRIFHVARGGRRLLTTDDVAFSDADSGFADAQLVLTRKDLLFGSIVAVDEPTRPIYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QTISRIFHVARGGRRLLTTDDVAFSDADSGFADAQLVLTRKDLLFGSIVAVDEPTRPIYR
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB9 FTQEDLRKRRVLFVHSGADRGWIQLQVSDGQHQATALLEVQASEPYLRVANGSSLVVPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FTQEDLRKRRVLFVHSGADRGWIQLQVSDGQHQATALLEVQASEPYLRVANGSSLVVPQG
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB9 GQGTIDTAVLHLDTNLDIRSGDEVHYHVTAGPRWGQLVRAGQPATAFSQQDLLDGAVLYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GQGTIDTAVLHLDTNLDIRSGDEVHYHVTAGPRWGQLVRAGQPATAFSQQDLLDGAVLYS
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB9 HNGSLSPRDTMAFSVEAGPVHTDATLQVTIALEGPLAPLKLVRHKKIYVFQGEAAEIRRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HNGSLSPRDTMAFSVEAGPVHTDATLQVTIALEGPLAPLKLVRHKKIYVFQGEAAEIRRD
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KB9 QLEAAQEAVPPADIVFSVKSPPSAGYLVMVSRGALADEPPSLDPVQSFSQEAVDTGRVLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QLEAAQEAVPPADIVFSVKSPPSAGYLVMVSRGALADEPPSLDPVQSFSQEAVDTGRVLY
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KB9 LHSRPEAWSDAFSLDVASGLGAPLEGVLVELEVLPAAIPLEAQNFSVPEGGSLTLAPPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LHSRPEAWSDAFSLDVASGLGAPLEGVLVELEVLPAAIPLEAQNFSVPEGGSLTLAPPLL
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KB9 RVSGPYFPTLLGLSLQVLEPPQHGALQKEDGPQARTLSAFSWRMVEEQLIRYVHDGSETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RVSGPYFPTLLGLSLQVLEPPQHGALQKEDGPQARTLSAFSWRMVEEQLIRYVHDGSETL
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KB9 TDSFVLMANASEMDRQSHPVAFTVTVLPVNDQPPILTTNTGLQMWEGATAPIPAEALRST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TDSFVLMANASEMDRQSHPVAFTVTVLPVNDQPPILTTNTGLQMWEGATAPIPAEALRST
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KB9 DGDSGSEDLVYTIEQPSNGRVVLRGAPGTEVRSFTQAQLDGGLVLFSHRGTLDGGFRFRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DGDSGSEDLVYTIEQPSNGRVVLRGAPGTEVRSFTQAQLDGGLVLFSHRGTLDGGFRFRL
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KB9 SDGEHTSPGHFFRVTAQKQVLLSLKGSQTLTVCPGSVQPLSSQTLRASSSAGTDPQLLLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SDGEHTSPGHFFRVTAQKQVLLSLKGSQTLTVCPGSVQPLSSQTLRASSSAGTDPQLLLY
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KB9 RVVRGPQLGRLFHAQQDSTGEALVNFTQAEVYAGNILYEHEMPPEPFWEAHDTLELQLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RVVRGPQLGRLFHAQQDSTGEALVNFTQAEVYAGNILYEHEMPPEPFWEAHDTLELQLSS
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KB9 PPARDVAATLAVAVSFEAACPQRPSHLWKNKGLWVPEGQRARITVAALDASNLLASVPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPARDVAATLAVAVSFEAACPQRPSHLWKNKGLWVPEGQRARITVAALDASNLLASVPSP
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KB9 QRSEHDVLFQVTQFPSRGQLLVSEEPLHAGQPHFLQSQLAAGQLVYAHGGGGTQQDGFHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QRSEHDVLFQVTQFPSRGQLLVSEEPLHAGQPHFLQSQLAAGQLVYAHGGGGTQQDGFHF
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KB9 RAHLQGPAGASVAGPQTSEAFAITVRDVNERPPQPQASVPLRLTRGSRAPISRAQLSVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RAHLQGPAGASVAGPQTSEAFAITVRDVNERPPQPQASVPLRLTRGSRAPISRAQLSVVD
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910 1920
pF1KB9 PDSAPGEIEYEVQRAPHNGFLSLVGGGLGPVTRFTQADVDSGRLAFVANGSSVAGIFQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PDSAPGEIEYEVQRAPHNGFLSLVGGGLGPVTRFTQADVDSGRLAFVANGSSVAGIFQLS
1870 1880 1890 1900 1910 1920
1930 1940 1950 1960 1970 1980
pF1KB9 MSDGASPPLPMSLAVDILPSAIEVQLRAPLEVPQALGRSSLSQQQLRVVSDREEPEAAYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSDGASPPLPMSLAVDILPSAIEVQLRAPLEVPQALGRSSLSQQQLRVVSDREEPEAAYR
1930 1940 1950 1960 1970 1980
1990 2000 2010 2020 2030 2040
pF1KB9 LIQGPQYGHLLVGGRPTSAFSQFQIDQGEVVFAFTNFSSSHDHFRVLALARGVNASAVVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LIQGPQYGHLLVGGRPTSAFSQFQIDQGEVVFAFTNFSSSHDHFRVLALARGVNASAVVN
1990 2000 2010 2020 2030 2040
2050 2060 2070 2080 2090 2100
pF1KB9 VTVRALLHVWAGGPWPQGATLRLDPTVLDAGELANRTGSVPRFRLLEGPRHGRVVRVPRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VTVRALLHVWAGGPWPQGATLRLDPTVLDAGELANRTGSVPRFRLLEGPRHGRVVRVPRA
2050 2060 2070 2080 2090 2100
2110 2120 2130 2140 2150 2160
pF1KB9 RTEPGGSQLVEQFTQQDLEDGRLGLEVGRPEGRAPGPAGDSLTLELWAQGVPPAVASLDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RTEPGGSQLVEQFTQQDLEDGRLGLEVGRPEGRAPGPAGDSLTLELWAQGVPPAVASLDF
2110 2120 2130 2140 2150 2160
2170 2180 2190 2200 2210 2220
pF1KB9 ATEPYNAARPYSVALLSVPEAARTEAGKPESSTPTGEPGPMASSPEPAVAKGGFLSFLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ATEPYNAARPYSVALLSVPEAARTEAGKPESSTPTGEPGPMASSPEPAVAKGGFLSFLEA
2170 2180 2190 2200 2210 2220
2230 2240 2250 2260 2270 2280
pF1KB9 NMFSVIIPMCLVLLLLALILPLLFYLRKRNKTGKHDVQVLTAKPRNGLAGDTETFRKVEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NMFSVIIPMCLVLLLLALILPLLFYLRKRNKTGKHDVQVLTAKPRNGLAGDTETFRKVEP
2230 2240 2250 2260 2270 2280
2290 2300 2310 2320
pF1KB9 GQAIPLTAVPGQGPPPGGQPDPELLQFCRTPNPALKNGQYWV
::::::::::::::::::::::::::::::::::::::::::
CCDS10 GQAIPLTAVPGQGPPPGGQPDPELLQFCRTPNPALKNGQYWV
2290 2300 2310 2320
2322 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:19:09 2016 done: Fri Nov 4 17:19:10 2016
Total Scan time: 6.540 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]