FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9562, 788 aa
  1>>>pF1KB9562 788 - 788 aa - 788 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8346+/-0.000988; mu= 13.3106+/- 0.060
 mean_var=108.5992+/-21.504, 0's: 0 Z-trim(108.2): 12  B-trim: 0 in 0/51
 Lambda= 0.123072
 statistics sampled from 10065 (10067) to 10065 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.309), width:  16
 Scan time:  4.090

The best scores are:                                      opt bits E(32554)
CCDS32726.1 HID1 gene_id:283987|Hs108|chr17        ( 788) 5289 950.4       0


>>CCDS32726.1 HID1 gene_id:283987|Hs108|chr17             (788 aa)
 initn: 5289 init1: 5289 opt: 5289  Z-score: 5077.9  bits: 950.4 E(32554):    0
Smith-Waterman score: 5289; 100.0% identity (100.0% similar) in 788 aa overlap (1-788:1-788)

               10        20        30        40        50        60
pF1KB9 MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TVPGAGRGGQGEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TVPGAGRGGQGEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB9 SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV
              730       740       750       760       770       780

               
pF1KB9 KLFEIQRV
       ::::::::
CCDS32 KLFEIQRV
               




788 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:27:54 2016 done: Fri Nov  4 23:27:54 2016
 Total Scan time:  4.090 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]