Result of FASTA (omim) for
pF1KB9551
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9551, 385 aa
1>>>pF1KB9551 385 - 385 aa - 385 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6526+/-0.000391; mu= 15.2296+/- 0.024
mean_var=76.9224+/-15.363, 0's: 0 Z-trim(111.5): 24 B-trim: 0 in 0/56
Lambda= 0.146234
statistics sampled from 20128 (20134) to 20128 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.236), width: 16
Scan time: 7.970
The best scores are: opt bits E(85289)
NP_003064 (OMIM: 162091,601607,609322,614608) SWI/ ( 385) 2573 552.6 5.6e-157
NP_001007469 (OMIM: 162091,601607,609322,614608) S ( 376) 2083 449.2 7.3e-126
NP_001304875 (OMIM: 162091,601607,609322,614608) S ( 394) 1467 319.3 1e-86
XP_011528647 (OMIM: 162091,601607,609322,614608) P ( 403) 1467 319.3 1e-86
>>NP_003064 (OMIM: 162091,601607,609322,614608) SWI/SNF- (385 aa)
initn: 2573 init1: 2573 opt: 2573 Z-score: 2939.2 bits: 552.6 E(85289): 5.6e-157
Smith-Waterman score: 2573; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)
10 20 30 40 50 60
pF1KB9 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
310 320 330 340 350 360
370 380
pF1KB9 MEKKIRDQDRNTRRMRRLANTAPAW
:::::::::::::::::::::::::
NP_003 MEKKIRDQDRNTRRMRRLANTAPAW
370 380
>>NP_001007469 (OMIM: 162091,601607,609322,614608) SWI/S (376 aa)
initn: 2073 init1: 2073 opt: 2083 Z-score: 2380.7 bits: 449.2 E(85289): 7.3e-126
Smith-Waterman score: 2486; 97.7% identity (97.7% similar) in 385 aa overlap (1-385:1-376)
10 20 30 40 50 60
pF1KB9 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
:::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_001 KKIVASSH---------DHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
70 80 90 100 110
130 140 150 160 170 180
pF1KB9 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB9 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB9 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB9 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
300 310 320 330 340 350
370 380
pF1KB9 MEKKIRDQDRNTRRMRRLANTAPAW
:::::::::::::::::::::::::
NP_001 MEKKIRDQDRNTRRMRRLANTAPAW
360 370
>>NP_001304875 (OMIM: 162091,601607,609322,614608) SWI/S (394 aa)
initn: 1904 init1: 1467 opt: 1467 Z-score: 1678.0 bits: 319.3 E(85289): 1e-86
Smith-Waterman score: 2430; 93.3% identity (93.3% similar) in 403 aa overlap (1-385:1-394)
10 20 30 40 50 60
pF1KB9 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
:::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_001 KKIVASSH---------DHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
70 80 90 100 110
130 140 150 160
pF1KB9 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPL-C------------
:::::::::::::::::::::::::::::::::::::::::::::: :
NP_001 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLWCGCIAALTLRADS
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB9 -----FDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEIL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALVLHFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEIL
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB9 CDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWD
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB9 MSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRN
300 310 320 330 340 350
350 360 370 380
pF1KB9 TGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
:::::::::::::::::::::::::::::::::::::::::::
NP_001 TGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
360 370 380 390
>>XP_011528647 (OMIM: 162091,601607,609322,614608) PREDI (403 aa)
initn: 1467 init1: 1467 opt: 1467 Z-score: 1677.9 bits: 319.3 E(85289): 1e-86
Smith-Waterman score: 2517; 95.5% identity (95.5% similar) in 403 aa overlap (1-385:1-403)
10 20 30 40 50 60
pF1KB9 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
70 80 90 100 110 120
130 140 150 160
pF1KB9 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPL-C------------
:::::::::::::::::::::::::::::::::::::::::::::: :
XP_011 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLWCGCIAALTLRADS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 -----FDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEIL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALVLHFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEIL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 CDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWD
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB9 MSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRN
310 320 330 340 350 360
350 360 370 380
pF1KB9 TGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
:::::::::::::::::::::::::::::::::::::::::::
XP_011 TGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
370 380 390 400
385 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:12:02 2016 done: Fri Nov 4 17:12:03 2016
Total Scan time: 7.970 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]