FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9551, 385 aa
  1>>>pF1KB9551 385 - 385 aa - 385 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4401+/-0.000904; mu= 16.1874+/- 0.054
 mean_var=67.4823+/-13.351, 0's: 0 Z-trim(104.4): 32  B-trim: 0 in 0/52
 Lambda= 0.156127
 statistics sampled from 7888 (7896) to 7888 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.243), width:  16
 Scan time:  2.730

The best scores are:                                      opt bits E(32554)
CCDS13817.1 SMARCB1 gene_id:6598|Hs108|chr22       ( 385) 2573 588.7  3e-168
CCDS46671.1 SMARCB1 gene_id:6598|Hs108|chr22       ( 376) 2083 478.3 4.9e-135
CCDS82699.1 SMARCB1 gene_id:6598|Hs108|chr22       ( 394) 1467 339.6   3e-93


>>CCDS13817.1 SMARCB1 gene_id:6598|Hs108|chr22            (385 aa)
 initn: 2573 init1: 2573 opt: 2573  Z-score: 3134.1  bits: 588.7 E(32554): 3e-168
Smith-Waterman score: 2573; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)

               10        20        30        40        50        60
pF1KB9 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
              310       320       330       340       350       360

              370       380     
pF1KB9 MEKKIRDQDRNTRRMRRLANTAPAW
       :::::::::::::::::::::::::
CCDS13 MEKKIRDQDRNTRRMRRLANTAPAW
              370       380     

>>CCDS46671.1 SMARCB1 gene_id:6598|Hs108|chr22            (376 aa)
 initn: 2073 init1: 2073 opt: 2083  Z-score: 2537.8  bits: 478.3 E(32554): 4.9e-135
Smith-Waterman score: 2486; 97.7% identity (97.7% similar) in 385 aa overlap (1-385:1-376)

               10        20        30        40        50        60
pF1KB9 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
       ::::::::         :::::::::::::::::::::::::::::::::::::::::::
CCDS46 KKIVASSH---------DHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
                        70        80        90       100       110 

              130       140       150       160       170       180
pF1KB9 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KB9 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
             180       190       200       210       220       230 

              250       260       270       280       290       300
pF1KB9 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
             240       250       260       270       280       290 

              310       320       330       340       350       360
pF1KB9 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
             300       310       320       330       340       350 

              370       380     
pF1KB9 MEKKIRDQDRNTRRMRRLANTAPAW
       :::::::::::::::::::::::::
CCDS46 MEKKIRDQDRNTRRMRRLANTAPAW
             360       370      

>>CCDS82699.1 SMARCB1 gene_id:6598|Hs108|chr22            (394 aa)
 initn: 1904 init1: 1467 opt: 1467  Z-score: 1787.6  bits: 339.6 E(32554): 3e-93
Smith-Waterman score: 2430; 93.3% identity (93.3% similar) in 403 aa overlap (1-385:1-394)

               10        20        30        40        50        60
pF1KB9 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
       ::::::::         :::::::::::::::::::::::::::::::::::::::::::
CCDS82 KKIVASSH---------DHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
                        70        80        90       100       110 

              130       140       150       160                    
pF1KB9 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPL-C------------
       :::::::::::::::::::::::::::::::::::::::::::::: :            
CCDS82 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLWCGCIAALTLRADS
             120       130       140       150       160       170 

            170       180       190       200       210       220  
pF1KB9 -----FDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEIL
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ALVLHFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEIL
             180       190       200       210       220       230 

            230       240       250       260       270       280  
pF1KB9 CDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWD
             240       250       260       270       280       290 

            290       300       310       320       330       340  
pF1KB9 MSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRN
             300       310       320       330       340       350 

            350       360       370       380     
pF1KB9 TGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
       :::::::::::::::::::::::::::::::::::::::::::
CCDS82 TGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
             360       370       380       390    




385 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:12:01 2016 done: Fri Nov  4 17:12:01 2016
 Total Scan time:  2.730 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]