Result of FASTA (omim) for
pF1KB9550
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9550, 317 aa
1>>>pF1KB9550 317 - 317 aa - 317 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1729+/-0.000339; mu= 17.9146+/- 0.021
mean_var=92.6423+/-19.349, 0's: 0 Z-trim(116.1): 227 B-trim: 1429 in 2/51
Lambda= 0.133251
statistics sampled from 26700 (26976) to 26700 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.316), width: 16
Scan time: 7.830
The best scores are: opt bits E(85289)
NP_001092005 (OMIM: 605970) ret finger protein-lik ( 317) 2167 426.5 3.4e-119
NP_006596 (OMIM: 605969) ret finger protein-like 2 ( 317) 2035 401.1 1.5e-111
NP_066306 (OMIM: 605968) ret finger protein-like 1 ( 317) 2002 394.8 1.2e-109
NP_006595 (OMIM: 605970) ret finger protein-like 3 ( 288) 1974 389.4 4.8e-108
XP_011528134 (OMIM: 605969) PREDICTED: ret finger ( 378) 1876 370.7 2.7e-102
NP_001091997 (OMIM: 605969) ret finger protein-lik ( 378) 1876 370.7 2.7e-102
XP_011528130 (OMIM: 605969) PREDICTED: ret finger ( 416) 1876 370.7 2.9e-102
XP_011528132 (OMIM: 605969) PREDICTED: ret finger ( 416) 1876 370.7 2.9e-102
XP_011528128 (OMIM: 605969) PREDICTED: ret finger ( 416) 1876 370.7 2.9e-102
XP_011528129 (OMIM: 605969) PREDICTED: ret finger ( 416) 1876 370.7 2.9e-102
XP_016884025 (OMIM: 605969) PREDICTED: ret finger ( 288) 1863 368.0 1.3e-101
NP_001153017 (OMIM: 605969) ret finger protein-lik ( 288) 1863 368.0 1.3e-101
XP_016884024 (OMIM: 605969) PREDICTED: ret finger ( 288) 1863 368.0 1.3e-101
NP_001153018 (OMIM: 605969) ret finger protein-lik ( 288) 1863 368.0 1.3e-101
XP_011528600 (OMIM: 605968) PREDICTED: ret finger ( 288) 1815 358.8 7.6e-99
XP_016884391 (OMIM: 605968) PREDICTED: ret finger ( 288) 1815 358.8 7.6e-99
XP_016884390 (OMIM: 605968) PREDICTED: ret finger ( 288) 1815 358.8 7.6e-99
XP_016884389 (OMIM: 605968) PREDICTED: ret finger ( 288) 1815 358.8 7.6e-99
XP_011528601 (OMIM: 605968) PREDICTED: ret finger ( 288) 1815 358.8 7.6e-99
NP_001138486 (OMIM: 612601) ret finger protein-lik ( 287) 1145 230.0 4.5e-60
XP_011525217 (OMIM: 612601) PREDICTED: ret finger ( 344) 1145 230.1 5.1e-60
XP_016884023 (OMIM: 605970) PREDICTED: ret finger ( 168) 688 141.9 8.6e-34
NP_006501 (OMIM: 602165) zinc finger protein RFP [ ( 513) 517 109.5 1.5e-23
NP_008925 (OMIM: 613595) butyrophilin subfamily 3 ( 584) 509 108.1 4.7e-23
NP_932078 (OMIM: 613595) butyrophilin subfamily 3 ( 535) 506 107.4 6.5e-23
NP_001229732 (OMIM: 613595) butyrophilin subfamily ( 374) 501 106.3 9.9e-23
NP_003132 (OMIM: 109092) E3 ubiquitin-protein liga ( 475) 499 106.0 1.5e-22
XP_016878725 (OMIM: 134610,249100,608107) PREDICTE ( 780) 499 106.3 2.2e-22
NP_000234 (OMIM: 134610,249100,608107) pyrin isofo ( 781) 499 106.3 2.2e-22
XP_006715046 (OMIM: 613593) PREDICTED: butyrophili ( 419) 489 104.1 5.3e-22
NP_001138480 (OMIM: 613593) butyrophilin subfamily ( 461) 489 104.1 5.7e-22
XP_005248890 (OMIM: 613593) PREDICTED: butyrophili ( 506) 489 104.2 6.1e-22
NP_008979 (OMIM: 613593) butyrophilin subfamily 3 ( 513) 489 104.2 6.1e-22
XP_011542587 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 391) 472 100.8 4.9e-21
XP_016857901 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 467) 472 100.9 5.5e-21
NP_660215 (OMIM: 607868) E3 ubiquitin-protein liga ( 468) 472 100.9 5.5e-21
XP_011512533 (OMIM: 613591) PREDICTED: butyrophili ( 313) 460 98.4 2.1e-20
NP_001184168 (OMIM: 613591) butyrophilin subfamily ( 313) 460 98.4 2.1e-20
XP_005248855 (OMIM: 613591) PREDICTED: butyrophili ( 407) 460 98.5 2.5e-20
XP_016865656 (OMIM: 613591) PREDICTED: butyrophili ( 407) 460 98.5 2.5e-20
NP_853509 (OMIM: 613591) butyrophilin subfamily 2 ( 407) 460 98.5 2.5e-20
XP_011512531 (OMIM: 613591) PREDICTED: butyrophili ( 461) 460 98.5 2.7e-20
XP_016865655 (OMIM: 613591) PREDICTED: butyrophili ( 461) 460 98.5 2.7e-20
NP_001184166 (OMIM: 613591) butyrophilin subfamily ( 523) 460 98.6 3e-20
NP_008926 (OMIM: 613591) butyrophilin subfamily 2 ( 523) 460 98.6 3e-20
XP_006715016 (OMIM: 613591) PREDICTED: butyrophili ( 523) 460 98.6 3e-20
XP_011512530 (OMIM: 613591) PREDICTED: butyrophili ( 523) 460 98.6 3e-20
XP_005248854 (OMIM: 613591) PREDICTED: butyrophili ( 523) 460 98.6 3e-20
NP_001184162 (OMIM: 613590) butyrophilin subfamily ( 466) 458 98.2 3.6e-20
NP_008980 (OMIM: 613590) butyrophilin subfamily 2 ( 527) 458 98.2 3.9e-20
>>NP_001092005 (OMIM: 605970) ret finger protein-like 3 (317 aa)
initn: 2167 init1: 2167 opt: 2167 Z-score: 2260.8 bits: 426.5 E(85289): 3.4e-119
Smith-Waterman score: 2167; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
250 260 270 280 290 300
310
pF1KB9 LMNSGTTDAPVRPGEAK
:::::::::::::::::
NP_001 LMNSGTTDAPVRPGEAK
310
>>NP_006596 (OMIM: 605969) ret finger protein-like 2 iso (317 aa)
initn: 2035 init1: 2035 opt: 2035 Z-score: 2123.7 bits: 401.1 E(85289): 1.5e-111
Smith-Waterman score: 2035; 94.0% identity (97.8% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
::::::::::::::.:::. :::::::::::::::::::::::::::::::::::::.::
NP_006 MKRLSLVTTNRLSPHGNFFTLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
:::::::::::::::::::: ::::..:::: :::::::.::::::::::::::::::::
NP_006 LKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
:::::::::::.:::::::::::::::::: : :::::::::::::::::::::::::::
NP_006 RKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTCGRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
::::::::::::::::::::: ::.:::::::::::::::::.::::.:::::::.:::
NP_006 CWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLFVDR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
NP_006 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLSICP
250 260 270 280 290 300
310
pF1KB9 LMNSGTTDAPVRPGEAK
:::::::::::::::::
NP_006 LMNSGTTDAPVRPGEAK
310
>>NP_066306 (OMIM: 605968) ret finger protein-like 1 [Ho (317 aa)
initn: 2002 init1: 2002 opt: 2002 Z-score: 2089.4 bits: 394.8 E(85289): 1.2e-109
Smith-Waterman score: 2002; 91.8% identity (97.5% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
::::::::::::::.::::::::::::::::::::::::::::::::::::::::::.::
NP_066 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
.:::::::::::::::::::::::::.:::::. :::::.::::::::::::::::::::
NP_066 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
:::::::::::::::::::::::::::::: :::::::::::::::.:::::::::::::
NP_066 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
:::::::::::::::::::::: ::.:.:::: :::::::::::::::::::::::.:::
NP_066 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
::::::::::::::::::::::.::::::::::::::::. :.:: :::::..::::::
NP_066 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICP
250 260 270 280 290 300
310
pF1KB9 LMNSGTTDAPVRPGEAK
..: :::::::.:::::
NP_066 VINPGTTDAPVHPGEAK
310
>>NP_006595 (OMIM: 605970) ret finger protein-like 3 iso (288 aa)
initn: 1974 init1: 1974 opt: 1974 Z-score: 2060.8 bits: 389.4 E(85289): 4.8e-108
Smith-Waterman score: 1974; 100.0% identity (100.0% similar) in 288 aa overlap (30-317:1-288)
10 20 30 40 50 60
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
:::::::::::::::::::::::::::::::
NP_006 MAALFQEASSCPVCSDYLEKPMSLECGCTVC
10 20 30
70 80 90 100 110 120
pF1KB9 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
220 230 240 250 260 270
310
pF1KB9 LMNSGTTDAPVRPGEAK
:::::::::::::::::
NP_006 LMNSGTTDAPVRPGEAK
280
>>XP_011528134 (OMIM: 605969) PREDICTED: ret finger prot (378 aa)
initn: 1876 init1: 1876 opt: 1876 Z-score: 1957.5 bits: 370.7 E(85289): 2.7e-102
Smith-Waterman score: 1876; 94.5% identity (97.9% similar) in 290 aa overlap (28-317:89-378)
10 20 30 40 50
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGC
::::::::::::::::::::::::::::::
XP_011 TNKRPSCAPSPQDLSAQWKQLEDRGASSRRVDMAALFQEASSCPVCSDYLEKPMSLECGC
60 70 80 90 100 110
60 70 80 90 100 110
pF1KB9 TVCLKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMN
.:::::::::::::::::::::: ::::..:::: :::::::.:::::::::::::::::
XP_011 AVCLKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMN
120 130 140 150 160 170
120 130 140 150 160 170
pF1KB9 PRMRKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTC
::::::::::::::.:::::::::::::::::: : ::::::::::::::::::::::::
XP_011 PRMRKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTC
180 190 200 210 220 230
180 190 200 210 220 230
pF1KB9 GRHYWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLL
::: ::::::::::::::::::::: ::.:::::::::::::::::.::::.:::::::.
XP_011 GRHCWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLF
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB9 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLS
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
XP_011 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLS
300 310 320 330 340 350
300 310
pF1KB9 ICPLMNSGTTDAPVRPGEAK
::::::::::::::::::::
XP_011 ICPLMNSGTTDAPVRPGEAK
360 370
>>NP_001091997 (OMIM: 605969) ret finger protein-like 2 (378 aa)
initn: 1876 init1: 1876 opt: 1876 Z-score: 1957.5 bits: 370.7 E(85289): 2.7e-102
Smith-Waterman score: 1876; 94.5% identity (97.9% similar) in 290 aa overlap (28-317:89-378)
10 20 30 40 50
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGC
::::::::::::::::::::::::::::::
NP_001 TNKRPSCAPSPQDLSAQWKQLEDRGASSRRVDMAALFQEASSCPVCSDYLEKPMSLECGC
60 70 80 90 100 110
60 70 80 90 100 110
pF1KB9 TVCLKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMN
.:::::::::::::::::::::: ::::..:::: :::::::.:::::::::::::::::
NP_001 AVCLKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMN
120 130 140 150 160 170
120 130 140 150 160 170
pF1KB9 PRMRKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTC
::::::::::::::.:::::::::::::::::: : ::::::::::::::::::::::::
NP_001 PRMRKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTC
180 190 200 210 220 230
180 190 200 210 220 230
pF1KB9 GRHYWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLL
::: ::::::::::::::::::::: ::.:::::::::::::::::.::::.:::::::.
NP_001 GRHCWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLF
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB9 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLS
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_001 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLS
300 310 320 330 340 350
300 310
pF1KB9 ICPLMNSGTTDAPVRPGEAK
::::::::::::::::::::
NP_001 ICPLMNSGTTDAPVRPGEAK
360 370
>>XP_011528130 (OMIM: 605969) PREDICTED: ret finger prot (416 aa)
initn: 1876 init1: 1876 opt: 1876 Z-score: 1957.0 bits: 370.7 E(85289): 2.9e-102
Smith-Waterman score: 1876; 94.5% identity (97.9% similar) in 290 aa overlap (28-317:127-416)
10 20 30 40 50
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGC
::::::::::::::::::::::::::::::
XP_011 TNKRPSCAPSPQDLSAQWKQLEDRGASSRRVDMAALFQEASSCPVCSDYLEKPMSLECGC
100 110 120 130 140 150
60 70 80 90 100 110
pF1KB9 TVCLKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMN
.:::::::::::::::::::::: ::::..:::: :::::::.:::::::::::::::::
XP_011 AVCLKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMN
160 170 180 190 200 210
120 130 140 150 160 170
pF1KB9 PRMRKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTC
::::::::::::::.:::::::::::::::::: : ::::::::::::::::::::::::
XP_011 PRMRKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTC
220 230 240 250 260 270
180 190 200 210 220 230
pF1KB9 GRHYWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLL
::: ::::::::::::::::::::: ::.:::::::::::::::::.::::.:::::::.
XP_011 GRHCWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLF
280 290 300 310 320 330
240 250 260 270 280 290
pF1KB9 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLS
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
XP_011 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLS
340 350 360 370 380 390
300 310
pF1KB9 ICPLMNSGTTDAPVRPGEAK
::::::::::::::::::::
XP_011 ICPLMNSGTTDAPVRPGEAK
400 410
>>XP_011528132 (OMIM: 605969) PREDICTED: ret finger prot (416 aa)
initn: 1876 init1: 1876 opt: 1876 Z-score: 1957.0 bits: 370.7 E(85289): 2.9e-102
Smith-Waterman score: 1876; 94.5% identity (97.9% similar) in 290 aa overlap (28-317:127-416)
10 20 30 40 50
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGC
::::::::::::::::::::::::::::::
XP_011 TNKRPSCAPSPQDLSAQWKQLEDRGASSRRVDMAALFQEASSCPVCSDYLEKPMSLECGC
100 110 120 130 140 150
60 70 80 90 100 110
pF1KB9 TVCLKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMN
.:::::::::::::::::::::: ::::..:::: :::::::.:::::::::::::::::
XP_011 AVCLKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMN
160 170 180 190 200 210
120 130 140 150 160 170
pF1KB9 PRMRKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTC
::::::::::::::.:::::::::::::::::: : ::::::::::::::::::::::::
XP_011 PRMRKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTC
220 230 240 250 260 270
180 190 200 210 220 230
pF1KB9 GRHYWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLL
::: ::::::::::::::::::::: ::.:::::::::::::::::.::::.:::::::.
XP_011 GRHCWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLF
280 290 300 310 320 330
240 250 260 270 280 290
pF1KB9 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLS
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
XP_011 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLS
340 350 360 370 380 390
300 310
pF1KB9 ICPLMNSGTTDAPVRPGEAK
::::::::::::::::::::
XP_011 ICPLMNSGTTDAPVRPGEAK
400 410
>>XP_011528128 (OMIM: 605969) PREDICTED: ret finger prot (416 aa)
initn: 1876 init1: 1876 opt: 1876 Z-score: 1957.0 bits: 370.7 E(85289): 2.9e-102
Smith-Waterman score: 1876; 94.5% identity (97.9% similar) in 290 aa overlap (28-317:127-416)
10 20 30 40 50
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGC
::::::::::::::::::::::::::::::
XP_011 TNKRPSCAPSPQDLSAQWKQLEDRGASSRRVDMAALFQEASSCPVCSDYLEKPMSLECGC
100 110 120 130 140 150
60 70 80 90 100 110
pF1KB9 TVCLKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMN
.:::::::::::::::::::::: ::::..:::: :::::::.:::::::::::::::::
XP_011 AVCLKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMN
160 170 180 190 200 210
120 130 140 150 160 170
pF1KB9 PRMRKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTC
::::::::::::::.:::::::::::::::::: : ::::::::::::::::::::::::
XP_011 PRMRKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTC
220 230 240 250 260 270
180 190 200 210 220 230
pF1KB9 GRHYWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLL
::: ::::::::::::::::::::: ::.:::::::::::::::::.::::.:::::::.
XP_011 GRHCWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLF
280 290 300 310 320 330
240 250 260 270 280 290
pF1KB9 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLS
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
XP_011 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLS
340 350 360 370 380 390
300 310
pF1KB9 ICPLMNSGTTDAPVRPGEAK
::::::::::::::::::::
XP_011 ICPLMNSGTTDAPVRPGEAK
400 410
>>XP_011528129 (OMIM: 605969) PREDICTED: ret finger prot (416 aa)
initn: 1876 init1: 1876 opt: 1876 Z-score: 1957.0 bits: 370.7 E(85289): 2.9e-102
Smith-Waterman score: 1876; 94.5% identity (97.9% similar) in 290 aa overlap (28-317:127-416)
10 20 30 40 50
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGC
::::::::::::::::::::::::::::::
XP_011 TNKRPSCAPSPQDLSAQWKQLEDRGASSRRVDMAALFQEASSCPVCSDYLEKPMSLECGC
100 110 120 130 140 150
60 70 80 90 100 110
pF1KB9 TVCLKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMN
.:::::::::::::::::::::: ::::..:::: :::::::.:::::::::::::::::
XP_011 AVCLKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMN
160 170 180 190 200 210
120 130 140 150 160 170
pF1KB9 PRMRKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTC
::::::::::::::.:::::::::::::::::: : ::::::::::::::::::::::::
XP_011 PRMRKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTC
220 230 240 250 260 270
180 190 200 210 220 230
pF1KB9 GRHYWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLL
::: ::::::::::::::::::::: ::.:::::::::::::::::.::::.:::::::.
XP_011 GRHCWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLF
280 290 300 310 320 330
240 250 260 270 280 290
pF1KB9 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLS
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
XP_011 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLS
340 350 360 370 380 390
300 310
pF1KB9 ICPLMNSGTTDAPVRPGEAK
::::::::::::::::::::
XP_011 ICPLMNSGTTDAPVRPGEAK
400 410
317 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:11:26 2016 done: Fri Nov 4 17:11:27 2016
Total Scan time: 7.830 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]