Result of FASTA (ccds) for
pF1KB9550
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9550, 317 aa
1>>>pF1KB9550 317 - 317 aa - 317 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4498+/-0.000841; mu= 16.1112+/- 0.051
mean_var=92.1406+/-18.935, 0's: 0 Z-trim(109.2): 116 B-trim: 383 in 1/50
Lambda= 0.133613
statistics sampled from 10612 (10745) to 10612 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.33), width: 16
Scan time: 2.670
The best scores are: opt bits E(32554)
CCDS43011.1 RFPL3 gene_id:10738|Hs108|chr22 ( 317) 2167 427.6 6.2e-120
CCDS46694.1 RFPL2 gene_id:10739|Hs108|chr22 ( 317) 2035 402.2 2.8e-112
CCDS13857.2 RFPL1 gene_id:5988|Hs108|chr22 ( 317) 2002 395.8 2.3e-110
CCDS13904.1 RFPL3 gene_id:10738|Hs108|chr22 ( 288) 1974 390.4 9.1e-109
CCDS43009.2 RFPL2 gene_id:10739|Hs108|chr22 ( 378) 1876 371.6 5.4e-103
CCDS46201.1 RFPL4A gene_id:342931|Hs108|chr19 ( 287) 1145 230.6 1.2e-60
CCDS59425.1 RFPL4AL1 gene_id:729974|Hs108|chr19 ( 287) 1145 230.6 1.2e-60
CCDS34515.1 RFPL4B gene_id:442247|Hs108|chr6 ( 263) 543 114.5 9.3e-26
CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 ( 513) 517 109.7 4.9e-24
CCDS4611.1 BTN3A3 gene_id:10384|Hs108|chr6 ( 584) 509 108.2 1.6e-23
CCDS4612.2 BTN3A3 gene_id:10384|Hs108|chr6 ( 535) 506 107.6 2.2e-23
CCDS44525.1 TRIM21 gene_id:6737|Hs108|chr11 ( 475) 499 106.2 5.1e-23
CCDS10498.1 MEFV gene_id:4210|Hs108|chr16 ( 781) 499 106.4 7.3e-23
CCDS47388.1 BTN3A1 gene_id:11119|Hs108|chr6 ( 461) 489 104.3 1.9e-22
CCDS4608.1 BTN3A1 gene_id:11119|Hs108|chr6 ( 513) 489 104.3 2.1e-22
CCDS3851.1 TRIML1 gene_id:339976|Hs108|chr4 ( 468) 472 101.0 1.9e-21
CCDS31048.1 TRIM11 gene_id:81559|Hs108|chr1 ( 468) 472 101.0 1.9e-21
CCDS56403.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 313) 460 98.6 6.9e-21
CCDS4607.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 407) 460 98.7 8.4e-21
CCDS4606.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 523) 460 98.8 1e-20
CCDS56405.1 BTN2A1 gene_id:11120|Hs108|chr6 ( 466) 458 98.3 1.2e-20
CCDS4613.1 BTN2A1 gene_id:11120|Hs108|chr6 ( 527) 458 98.4 1.3e-20
CCDS4614.1 BTN1A1 gene_id:696|Hs108|chr6 ( 526) 454 97.6 2.3e-20
CCDS475.1 ERMAP gene_id:114625|Hs108|chr1 ( 475) 450 96.8 3.6e-20
CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 ( 488) 442 95.3 1.1e-19
CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 ( 518) 442 95.3 1.1e-19
CCDS4568.1 TRIM38 gene_id:10475|Hs108|chr6 ( 465) 424 91.8 1.1e-18
CCDS31356.1 TRIM68 gene_id:55128|Hs108|chr11 ( 485) 424 91.8 1.2e-18
CCDS76745.1 TRIM69 gene_id:140691|Hs108|chr15 ( 263) 411 89.0 4.2e-18
CCDS76746.1 TRIM69 gene_id:140691|Hs108|chr15 ( 279) 408 88.5 6.6e-18
CCDS73719.1 TRIM69 gene_id:140691|Hs108|chr15 ( 296) 408 88.5 6.9e-18
CCDS1636.1 TRIM58 gene_id:25893|Hs108|chr1 ( 486) 410 89.1 7.6e-18
CCDS10114.1 TRIM69 gene_id:140691|Hs108|chr15 ( 341) 408 88.6 7.7e-18
CCDS32220.1 TRIM69 gene_id:140691|Hs108|chr15 ( 500) 408 88.7 1e-17
CCDS4460.2 BTNL9 gene_id:153579|Hs108|chr5 ( 535) 382 83.7 3.4e-16
CCDS81297.1 TRIM62 gene_id:55223|Hs108|chr1 ( 354) 376 82.4 5.7e-16
CCDS4463.1 TRIM7 gene_id:81786|Hs108|chr5 ( 303) 375 82.2 5.8e-16
CCDS43414.1 TRIM7 gene_id:81786|Hs108|chr5 ( 329) 375 82.2 6.1e-16
CCDS376.1 TRIM62 gene_id:55223|Hs108|chr1 ( 475) 376 82.5 7e-16
CCDS4462.1 TRIM7 gene_id:81786|Hs108|chr5 ( 511) 375 82.4 8.5e-16
CCDS3850.2 TRIML2 gene_id:205860|Hs108|chr4 ( 437) 369 81.1 1.7e-15
CCDS34654.1 TRIM50 gene_id:135892|Hs108|chr7 ( 487) 368 81.0 2.1e-15
CCDS3808.1 TRIM60 gene_id:166655|Hs108|chr4 ( 471) 352 77.9 1.7e-14
CCDS1571.1 TRIM17 gene_id:51127|Hs108|chr1 ( 477) 344 76.4 5.1e-14
CCDS53693.1 TRIM64B gene_id:642446|Hs108|chr11 ( 449) 336 74.8 1.4e-13
CCDS73363.1 TRIM64 gene_id:120146|Hs108|chr11 ( 449) 324 72.5 7e-13
CCDS73287.1 TRIM64C gene_id:646754|Hs108|chr11 ( 450) 323 72.3 8e-13
CCDS60930.1 TRIM49D1 gene_id:399939|Hs108|chr11 ( 452) 309 69.6 5.2e-12
CCDS54959.1 BTNL8 gene_id:79908|Hs108|chr5 ( 316) 304 68.5 7.9e-12
CCDS54958.1 BTNL8 gene_id:79908|Hs108|chr5 ( 375) 304 68.6 8.9e-12
>>CCDS43011.1 RFPL3 gene_id:10738|Hs108|chr22 (317 aa)
initn: 2167 init1: 2167 opt: 2167 Z-score: 2266.7 bits: 427.6 E(32554): 6.2e-120
Smith-Waterman score: 2167; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
250 260 270 280 290 300
310
pF1KB9 LMNSGTTDAPVRPGEAK
:::::::::::::::::
CCDS43 LMNSGTTDAPVRPGEAK
310
>>CCDS46694.1 RFPL2 gene_id:10739|Hs108|chr22 (317 aa)
initn: 2035 init1: 2035 opt: 2035 Z-score: 2129.2 bits: 402.2 E(32554): 2.8e-112
Smith-Waterman score: 2035; 94.0% identity (97.8% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
::::::::::::::.:::. :::::::::::::::::::::::::::::::::::::.::
CCDS46 MKRLSLVTTNRLSPHGNFFTLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
:::::::::::::::::::: ::::..:::: :::::::.::::::::::::::::::::
CCDS46 LKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
:::::::::::.:::::::::::::::::: : :::::::::::::::::::::::::::
CCDS46 RKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTCGRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
::::::::::::::::::::: ::.:::::::::::::::::.::::.:::::::.:::
CCDS46 CWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLFVDR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS46 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLSICP
250 260 270 280 290 300
310
pF1KB9 LMNSGTTDAPVRPGEAK
:::::::::::::::::
CCDS46 LMNSGTTDAPVRPGEAK
310
>>CCDS13857.2 RFPL1 gene_id:5988|Hs108|chr22 (317 aa)
initn: 2002 init1: 2002 opt: 2002 Z-score: 2094.8 bits: 395.8 E(32554): 2.3e-110
Smith-Waterman score: 2002; 91.8% identity (97.5% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
::::::::::::::.::::::::::::::::::::::::::::::::::::::::::.::
CCDS13 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
.:::::::::::::::::::::::::.:::::. :::::.::::::::::::::::::::
CCDS13 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
:::::::::::::::::::::::::::::: :::::::::::::::.:::::::::::::
CCDS13 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
:::::::::::::::::::::: ::.:.:::: :::::::::::::::::::::::.:::
CCDS13 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
::::::::::::::::::::::.::::::::::::::::. :.:: :::::..::::::
CCDS13 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICP
250 260 270 280 290 300
310
pF1KB9 LMNSGTTDAPVRPGEAK
..: :::::::.:::::
CCDS13 VINPGTTDAPVHPGEAK
310
>>CCDS13904.1 RFPL3 gene_id:10738|Hs108|chr22 (288 aa)
initn: 1974 init1: 1974 opt: 1974 Z-score: 2066.2 bits: 390.4 E(32554): 9.1e-109
Smith-Waterman score: 1974; 100.0% identity (100.0% similar) in 288 aa overlap (30-317:1-288)
10 20 30 40 50 60
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
:::::::::::::::::::::::::::::::
CCDS13 MAALFQEASSCPVCSDYLEKPMSLECGCTVC
10 20 30
70 80 90 100 110 120
pF1KB9 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
220 230 240 250 260 270
310
pF1KB9 LMNSGTTDAPVRPGEAK
:::::::::::::::::
CCDS13 LMNSGTTDAPVRPGEAK
280
>>CCDS43009.2 RFPL2 gene_id:10739|Hs108|chr22 (378 aa)
initn: 1876 init1: 1876 opt: 1876 Z-score: 1962.5 bits: 371.6 E(32554): 5.4e-103
Smith-Waterman score: 1876; 94.5% identity (97.9% similar) in 290 aa overlap (28-317:89-378)
10 20 30 40 50
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGC
::::::::::::::::::::::::::::::
CCDS43 TNKRPSCAPSPQDLSAQWKQLEDRGASSRRVDMAALFQEASSCPVCSDYLEKPMSLECGC
60 70 80 90 100 110
60 70 80 90 100 110
pF1KB9 TVCLKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMN
.:::::::::::::::::::::: ::::..:::: :::::::.:::::::::::::::::
CCDS43 AVCLKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMN
120 130 140 150 160 170
120 130 140 150 160 170
pF1KB9 PRMRKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTC
::::::::::::::.:::::::::::::::::: : ::::::::::::::::::::::::
CCDS43 PRMRKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTC
180 190 200 210 220 230
180 190 200 210 220 230
pF1KB9 GRHYWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLL
::: ::::::::::::::::::::: ::.:::::::::::::::::.::::.:::::::.
CCDS43 GRHCWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLF
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB9 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLS
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS43 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLS
300 310 320 330 340 350
300 310
pF1KB9 ICPLMNSGTTDAPVRPGEAK
::::::::::::::::::::
CCDS43 ICPLMNSGTTDAPVRPGEAK
360 370
>>CCDS46201.1 RFPL4A gene_id:342931|Hs108|chr19 (287 aa)
initn: 1145 init1: 1145 opt: 1145 Z-score: 1202.6 bits: 230.6 E(32554): 1.2e-60
Smith-Waterman score: 1145; 57.8% identity (82.6% similar) in 282 aa overlap (30-311:1-282)
10 20 30 40 50 60
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
:: :.. :::: ::. ..:.:: . :
CCDS46 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACC
10 20 30
70 80 90 100 110 120
pF1KB9 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
:.:.::::::: :: ::: ::.:::.. :.:. .:. ::: :::::::::..: :::::
CCDS46 LQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPRM
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
::::::::.:.:::::.:.::.:::: ::: ..:::.. :::::...:.::.:::: :::
CCDS46 RKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRH
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
::::::::: ::.:::.:::. .::: :..: :: ::. :.:. ..:::::.: : :.
CCDS46 YWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVSP
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
.:.:::::::.::....:... .: :.::: . . :: :::.: . . ::..::::
CCDS46 QLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICS
220 230 240 250 260 270
310
pF1KB9 LMNSGTTDAPVRPGEAK
..: ....:::
CCDS46 VINPSAASAPVSSEGK
280
>>CCDS59425.1 RFPL4AL1 gene_id:729974|Hs108|chr19 (287 aa)
initn: 1145 init1: 1145 opt: 1145 Z-score: 1202.6 bits: 230.6 E(32554): 1.2e-60
Smith-Waterman score: 1145; 57.8% identity (82.6% similar) in 282 aa overlap (30-311:1-282)
10 20 30 40 50 60
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
:: :.. :::: ::. ..:.:: . :
CCDS59 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACC
10 20 30
70 80 90 100 110 120
pF1KB9 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
:.:.::::::: :: ::: ::.:::.. :.:. .:. ::: :::::::::..: :::::
CCDS59 LQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPRM
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
::::::::.:.:::::.:.::.:::: ::: ..:::.. :::::...:.::.:::: :::
CCDS59 RKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRH
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
::::::::: ::.:::.:::. .:::.:..: :: ::. :.:. ..:::::.: : :.
CCDS59 YWEVDVGTSQVWDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLWVSP
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
.:.:::::::.::....:... .: :. :: . . :: :::.: . . ::..::::
CCDS59 QLHRVGIFLDVGMRSIAFYNVSDGCHINTFIEIPVCEPWRPFFAHKRGSQDDQSILSICS
220 230 240 250 260 270
310
pF1KB9 LMNSGTTDAPVRPGEAK
..: .:..:::
CCDS59 VINPSTASAPVSSEGK
280
>>CCDS34515.1 RFPL4B gene_id:442247|Hs108|chr6 (263 aa)
initn: 464 init1: 148 opt: 543 Z-score: 575.9 bits: 114.5 E(32554): 9.3e-26
Smith-Waterman score: 543; 35.7% identity (65.1% similar) in 272 aa overlap (30-300:1-263)
10 20 30 40 50 60
pF1KB9 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
:: .: ::::: :.. .:: : . :
CCDS34 MAKRLQAELSCPVCLDFFSCSISLSCTHVFC
10 20 30
70 80 90 100 110 120
pF1KB9 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
. ::. : : .: : : . .. . :. :. :. . .:.. :.. ..
CCDS34 FDCIQRYILENHDFRAMCPLCRDVVKVPALE-EWQVSVLTLMTKQHNSRLEQSLHVREEL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
:.:. :.:::: ::...:..:.::::.. : ..::.. .. :.::.: :. :.:
CCDS34 RHFREDVTLDAATASSLLVFSNDLRSAQCKKI---HHDLTKDPRLA-CVLGTPCFSSGQH
100 110 120 130 140
190 200 210 220 230 240
pF1KB9 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
::::.:: :.::::.: . :.. .: : ::: .:.. :. . :.: : . ..
CCDS34 YWEVEVGEVKSWSLGVCKEPADRKSN-DLFPEHGFW-ISMKAGA-IHANT-HLERIPASP
150 160 170 180 190 200
250 260 270 280 290
pF1KB9 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQG-VLSIC
.:.::::::: .....:::.... .:: . . : : ::. . .:..: ::.::
CCDS34 RLRRVGIFLDADLEEIQFFDVDNNVLIYTHDGFFSLELLCPFFCLELLGEGESGNVLTIC
210 220 230 240 250 260
300 310
pF1KB9 PLMNSGTTDAPVRPGEAK
:
CCDS34 P
>>CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 (513 aa)
initn: 654 init1: 500 opt: 517 Z-score: 545.0 bits: 109.7 E(32554): 4.9e-24
Smith-Waterman score: 517; 40.3% identity (67.0% similar) in 206 aa overlap (99-301:287-492)
70 80 90 100 110 120
pF1KB9 KEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRMRKFQ---V
:. .:.. :... .. ..:. : :
CCDS46 RAERIRIPEPWITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSV
260 270 280 290 300 310
130 140 150 160 170 180
pF1KB9 DMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRHYWEVD
:.::: ::: :..::.::.:: . . :. : :::.. :.:::: : :::::::.
CCDS46 DVTLDPDTAYPSLILSDNLRQVRYSYLQQDLPDNPERFNLFPCVLGSPCFIAGRHYWEVE
320 330 340 350 360 370
190 200 210 220 230 240
pF1KB9 VGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDRKLQRV
:: ...: .:::..:: :: . . . :::.::: :.. : : :.: : . ::::
CCDS46 VGDKAKWTIGVCEDSVCRKGGVTSAPQNGFWAVSLWYGKEYWALTSPMTALPLRTPLQRV
380 390 400 410 420 430
250 260 270 280 290 300
pF1KB9 GIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICPLMNSG
:::::. .:::... :..:: .. :.::... : . . . : :::.
CCDS46 GIFLDYDAGEVSFYNVTERCHTFTFSHATFCGPVRPYFSLSYSGGKSAAPLIICPMSGID
440 450 460 470 480 490
310
pF1KB9 TTDAPVRPGEAK
CCDS46 GFSGHVGNHGHSMETSP
500 510
>>CCDS4611.1 BTN3A3 gene_id:10384|Hs108|chr6 (584 aa)
initn: 473 init1: 258 opt: 509 Z-score: 536.0 bits: 108.2 E(32554): 1.6e-23
Smith-Waterman score: 509; 39.7% identity (64.4% similar) in 219 aa overlap (86-301:300-514)
60 70 80 90 100 110
pF1KB9 GCTVCLKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQ
:. ..: . : : .:. . :..
CCDS46 LWRQQKEKIALSRETEREREMKEMGYAATEQEISLREKLQEELKWRKIQYMARGEKSLAY
270 280 290 300 310 320
120 130 140 150 160 170
pF1KB9 MNPRMRKFQ-VDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPR
. .: :. .:. :: :::: .::.:.: :::. . .. : :::. :.::
CCDS46 HEWKMALFKPADVILDPDTANAILLVSEDQRSVQRAEEPRDLPDNPERFEWRYCVLGCEN
330 340 350 360 370 380
180 190 200 210 220 230
pF1KB9 FTCGRHYWEVDVGTSTEWDLGVCRESVH-CKGKIQLTTELGFWTVSLRDGSRLSASTVPL
:: :::::::.:: :: .::: ..:. :: ...: : :.::..: ::.. : : :
CCDS46 FTSGRHYWEVEVGDRKEWHIGVCSKNVERKKGWVKMTPENGYWTMGLTDGNKYRALTEPR
390 400 410 420 430 440
240 250 260 270 280 290
pF1KB9 TFLLVDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRP-FLAPSIPPNGD
: : . . ..::::::. ..::..: .:::.::: .: ::: : : .. :.
CCDS46 TNLKLPEPPRKVGIFLDYETGEISFYNATDGSHIYTFPHASFSEPLYPVFRILTLEPT--
450 460 470 480 490 500
300 310
pF1KB9 QGVLSICPLMNSGTTDAPVRPGEAK
.:.:::.
CCDS46 --ALTICPIPKEVESSPDPDLVPDHSLETPLTPGLANESGEPQAEVTSLLLPAHPGAEVS
510 520 530 540 550 560
317 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:11:25 2016 done: Fri Nov 4 17:11:26 2016
Total Scan time: 2.670 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]