FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9544, 601 aa
  1>>>pF1KB9544 601 - 601 aa - 601 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4165+/-0.000855; mu= 6.5318+/- 0.052
 mean_var=183.0493+/-36.110, 0's: 0 Z-trim(113.6): 37  B-trim: 9 in 1/53
 Lambda= 0.094796
 statistics sampled from 14210 (14238) to 14210 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.437), width:  16
 Scan time:  4.050

The best scores are:                                      opt bits E(32554)
CCDS33641.1 HMGXB4 gene_id:10042|Hs108|chr22       ( 601) 3880 542.9 4.5e-154


>>CCDS33641.1 HMGXB4 gene_id:10042|Hs108|chr22            (601 aa)
 initn: 3880 init1: 3880 opt: 3880  Z-score: 2879.6  bits: 542.9 E(32554): 4.5e-154
Smith-Waterman score: 3880; 100.0% identity (100.0% similar) in 601 aa overlap (1-601:1-601)

               10        20        30        40        50        60
pF1KB9 MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREEEEIAAQVRNSSKKKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREEEEIAAQVRNSSKKKLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 TLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 GPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 YRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKAS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 SSEGSMKVKASSVGVLSPQKKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SSEGSMKVKASSVGVLSPQKKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 RLQETEGMVAVSGSLSVLLDSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RLQETEGMVAVSGSLSVLLDSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPG
              550       560       570       580       590       600

        
pF1KB9 L
       :
CCDS33 L
        




601 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:07:56 2016 done: Fri Nov  4 17:07:57 2016
 Total Scan time:  4.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]