FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9540, 351 aa
  1>>>pF1KB9540 351 - 351 aa - 351 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9536+/-0.000873; mu= 6.7629+/- 0.053
 mean_var=170.7574+/-33.696, 0's: 0 Z-trim(113.6): 14  B-trim: 0 in 0/51
 Lambda= 0.098149
 statistics sampled from 14212 (14222) to 14212 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.437), width:  16
 Scan time:  3.230

The best scores are:                                      opt bits E(32554)
CCDS13996.1 ATF4 gene_id:468|Hs108|chr22           ( 351) 2337 342.3 3.6e-94


>>CCDS13996.1 ATF4 gene_id:468|Hs108|chr22                (351 aa)
 initn: 2337 init1: 2337 opt: 2337  Z-score: 1804.0  bits: 342.3 E(32554): 3.6e-94
Smith-Waterman score: 2337; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KB9 MTEMSFLSSEVLVGDLMSPFDQSGLGAEESLGLLDDYLEVAKHFKPHGFSSDKAKAGSSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTEMSFLSSEVLVGDLMSPFDQSGLGAEESLGLLDDYLEVAKHFKPHGFSSDKAKAGSSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 WLAVDGLVSPSNNSKEDAFSGTDWMLEKMDLKEFDLDALLGIDDLETMPDDLLTTLDDTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WLAVDGLVSPSNNSKEDAFSGTDWMLEKMDLKEFDLDALLGIDDLETMPDDLLTTLDDTC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DLFAPLVQETNKQPPQTVNPIGHLPESLTKPDQVAPFTFLQPLPLSPGVLSSTPDHSFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLFAPLVQETNKQPPQTVNPIGHLPESLTKPDQVAPFTFLQPLPLSPGVLSSTPDHSFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ELGSEVDITEGDRKPDYTAYVAMIPQCIKEEDTPSDNDSGICMSPESYLGSPQHSPSTRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ELGSEVDITEGDRKPDYTAYVAMIPQCIKEEDTPSDNDSGICMSPESYLGSPQHSPSTRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 SPNRSLPSPGVLCGSARPKPYDPPGEKMVAAKVKGEKLDKKLKKMEQNKTAATRYRQKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPNRSLPSPGVLCGSARPKPYDPPGEKMVAAKVKGEKLDKKLKKMEQNKTAATRYRQKKR
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KB9 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEVRKARGKKRVP
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEVRKARGKKRVP
              310       320       330       340       350 




351 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:03:51 2016 done: Sat Nov  5 02:03:51 2016
 Total Scan time:  3.230 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]