Result of FASTA (ccds) for
pF1KB9537
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9537, 395 aa
1>>>pF1KB9537 395 - 395 aa - 395 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5190+/-0.000752; mu= 15.5192+/- 0.045
mean_var=64.7127+/-13.111, 0's: 0 Z-trim(108.9): 20 B-trim: 63 in 1/48
Lambda= 0.159433
statistics sampled from 10500 (10516) to 10500 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.323), width: 16
Scan time: 2.920
The best scores are: opt bits E(32554)
CCDS1561.1 JMJD4 gene_id:65094|Hs108|chr1 ( 463) 2796 651.7 3.9e-187
CCDS59203.1 JMJD4 gene_id:65094|Hs108|chr1 ( 447) 2060 482.4 3.5e-136
CCDS42384.1 JMJD6 gene_id:23210|Hs108|chr17 ( 403) 296 76.6 4.4e-14
CCDS42383.1 JMJD6 gene_id:23210|Hs108|chr17 ( 414) 296 76.6 4.5e-14
>>CCDS1561.1 JMJD4 gene_id:65094|Hs108|chr1 (463 aa)
initn: 2796 init1: 2796 opt: 2796 Z-score: 3473.1 bits: 651.7 E(32554): 3.9e-187
Smith-Waterman score: 2796; 100.0% identity (100.0% similar) in 391 aa overlap (5-395:73-463)
10 20 30
pF1KB9 MRAGPGRVAFVSEPGAFSYADFVRGFLLPNLPCV
::::::::::::::::::::::::::::::
CCDS15 VLSWMDRETRALADSHFRGLGVDVPGVGQAPGRVAFVSEPGAFSYADFVRGFLLPNLPCV
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB9 FSSAFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCGVQEYNSNPKEHMTLRDYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 FSSAFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCGVQEYNSNPKEHMTLRDYI
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB9 TYWKEYIQAGYSSPRGCLYLKDWHLCRDFPVEDVFTLPVYFSSDWLNEFWDALDVDDYRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 TYWKEYIQAGYSSPRGCLYLKDWHLCRDFPVEDVFTLPVYFSSDWLNEFWDALDVDDYRF
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB9 VYAGPAGSWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQEEALRDRHGNLPYDVTSPALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 VYAGPAGSWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQEEALRDRHGNLPYDVTSPALC
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB9 DTHLHPRNQLAGPPLEITQEAGEMVFVPSGWHHQVHNLDDTISINHNWVNGFNLANMWRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 DTHLHPRNQLAGPPLEITQEAGEMVFVPSGWHHQVHNLDDTISINHNWVNGFNLANMWRF
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB9 LQQELCAVQEEVSEWRDSMPDWHHHCQVIMRSCSGINFEEFYHFLKVIAEKRLLVLREAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LQQELCAVQEEVSEWRDSMPDWHHHCQVIMRSCSGINFEEFYHFLKVIAEKRLLVLREAA
350 360 370 380 390 400
340 350 360 370 380 390
pF1KB9 AEDGAGLGFEQAAFDVGRITEVLASLVAHPDFQRVDTSAFSPQPKELLQQLREAVDAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 AEDGAGLGFEQAAFDVGRITEVLASLVAHPDFQRVDTSAFSPQPKELLQQLREAVDAAAA
410 420 430 440 450 460
pF1KB9 P
:
CCDS15 P
>>CCDS59203.1 JMJD4 gene_id:65094|Hs108|chr1 (447 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 2558.4 bits: 482.4 E(32554): 3.5e-136
Smith-Waterman score: 2613; 95.9% identity (95.9% similar) in 391 aa overlap (5-395:73-447)
10 20 30
pF1KB9 MRAGPGRVAFVSEPGAFSYADFVRGFLLPNLPCV
::::::::::::::::::::::::::::::
CCDS59 VLSWMDRETRALADSHFRGLGVDVPGVGQAPGRVAFVSEPGAFSYADFVRGFLLPNLPCV
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB9 FSSAFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCGVQEYNSNPKEHMTLRDYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FSSAFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCGVQEYNSNPKEHMTLRDYI
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB9 TYWKEYIQAGYSSPRGCLYLKDWHLCRDFPVEDVFTLPVYFSSDWLNEFWDALDVDDYRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TYWKEYIQAGYSSPRGCLYLKDWHLCRDFPVEDVFTLPVYFSSDWLNEFWDALDVDDYRF
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB9 VYAGPAGSWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQEEALRDRHGNLPYDVTSPALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VYAGPAGSWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQEEALRDRHGNLPYDVTSPALC
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB9 DTHLHPRNQLAGPPLEITQEAGEMVFVPSGWHHQVHNLDDTISINHNWVNGFNLANMWRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DTHLHPRNQLAGPPLEITQEAGEMVFVPSGWHHQVHNLDDTISINHNWVNGFNLANMWRF
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB9 LQQELCAVQEEVSEWRDSMPDWHHHCQVIMRSCSGINFEEFYHFLKVIAEKRLLVLREAA
:::::::::::: ::::::::::::::::::::::::::::::::
CCDS59 LQQELCAVQEEV----------------IMRSCSGINFEEFYHFLKVIAEKRLLVLREAA
350 360 370 380
340 350 360 370 380 390
pF1KB9 AEDGAGLGFEQAAFDVGRITEVLASLVAHPDFQRVDTSAFSPQPKELLQQLREAVDAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AEDGAGLGFEQAAFDVGRITEVLASLVAHPDFQRVDTSAFSPQPKELLQQLREAVDAAAA
390 400 410 420 430 440
pF1KB9 P
:
CCDS59 P
>>CCDS42384.1 JMJD6 gene_id:23210|Hs108|chr17 (403 aa)
initn: 288 init1: 165 opt: 296 Z-score: 366.3 bits: 76.6 E(32554): 4.4e-14
Smith-Waterman score: 336; 31.1% identity (56.3% similar) in 270 aa overlap (17-272:54-298)
10 20 30 40
pF1KB9 MRAGPGRVAFVSEPGAFSYADFVRGFLLPNLPCVFSSAFTQGWGSR
.: .::. . : : :. .: .::...
CCDS42 LDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFVERYERPYKPVVLLNA-QEGWSAQ
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB9 RRWVTPAGRPDFDHLLRTYGDVVVPVANCGVQEYNSNPKEHMTLRDYITYWKEYIQAGYS
..:. ...: : : . .:: : :.. . .: .. :: ::... .
CCDS42 EKWT-------LERLKRKYRN---QKFKCG--EDNDGYSVKMKMKYYI----EYMESTRD
90 100 110 120
110 120 130 140 150 160
pF1KB9 -SPRGCLYLKD----WHLCRDFPVEDVFTLPVYFSSDWLNEFWDALDVDDYRFVYAGPAG
:: ::. : : : .:: . .: .:..: : .. ::. ::
CCDS42 DSP---LYIFDSSYGEHPKRRKLLED-YKVPKFFTDD-LFQYAGEKRRPPYRWFVMGPPR
130 140 150 160 170 180
170 180 190 200 210
pF1KB9 SWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQEEAL----RDRHGNLPYDVTSPALCDTH
: . .: : . . .:.. : :.:.: ::: . . : ::. :: .. . .
CCDS42 SGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWF---NV
190 200 210 220 230
220 230 240 250 260 270
pF1KB9 LHPRNQLAG-PP----LEITQEAGEMVFVPSGWHHQVHNLDDTISINHNWVNGFNLANMW
..::.:: :: ::: :. :: ::::.:: : : ::: ::.:..:.... :. .:
CCDS42 IYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVW
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB9 RFLQQELCAVQEEVSEWRDSMPDWHHHCQVIMRSCSGINFEEFYHFLKVIAEKRLLVLRE
CCDS42 HKTVRGRPKLSRKWYRILKQEHPELAVLADSVDLQESTGIASDSSSDSSSSSSSSSSDSD
300 310 320 330 340 350
>>CCDS42383.1 JMJD6 gene_id:23210|Hs108|chr17 (414 aa)
initn: 288 init1: 165 opt: 296 Z-score: 366.1 bits: 76.6 E(32554): 4.5e-14
Smith-Waterman score: 336; 31.1% identity (56.3% similar) in 270 aa overlap (17-272:54-298)
10 20 30 40
pF1KB9 MRAGPGRVAFVSEPGAFSYADFVRGFLLPNLPCVFSSAFTQGWGSR
.: .::. . : : :. .: .::...
CCDS42 LDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFVERYERPYKPVVLLNA-QEGWSAQ
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB9 RRWVTPAGRPDFDHLLRTYGDVVVPVANCGVQEYNSNPKEHMTLRDYITYWKEYIQAGYS
..:. ...: : : . .:: : :.. . .: .. :: ::... .
CCDS42 EKWT-------LERLKRKYRN---QKFKCG--EDNDGYSVKMKMKYYI----EYMESTRD
90 100 110 120
110 120 130 140 150 160
pF1KB9 -SPRGCLYLKD----WHLCRDFPVEDVFTLPVYFSSDWLNEFWDALDVDDYRFVYAGPAG
:: ::. : : : .:: . .: .:..: : .. ::. ::
CCDS42 DSP---LYIFDSSYGEHPKRRKLLED-YKVPKFFTDD-LFQYAGEKRRPPYRWFVMGPPR
130 140 150 160 170 180
170 180 190 200 210
pF1KB9 SWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQEEAL----RDRHGNLPYDVTSPALCDTH
: . .: : . . .:.. : :.:.: ::: . . : ::. :: .. . .
CCDS42 SGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWF---NV
190 200 210 220 230
220 230 240 250 260 270
pF1KB9 LHPRNQLAG-PP----LEITQEAGEMVFVPSGWHHQVHNLDDTISINHNWVNGFNLANMW
..::.:: :: ::: :. :: ::::.:: : : ::: ::.:..:.... :. .:
CCDS42 IYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVW
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB9 RFLQQELCAVQEEVSEWRDSMPDWHHHCQVIMRSCSGINFEEFYHFLKVIAEKRLLVLRE
CCDS42 HKTVRGRPKLSRKWYRILKQEHPELAVLADSVDLQESTGIASDSSSDSSSSSSSSSSDSD
300 310 320 330 340 350
395 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:19:42 2016 done: Sat Nov 5 02:19:43 2016
Total Scan time: 2.920 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]