Result of FASTA (ccds) for
pF1KB9521
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9521, 588 aa
1>>>pF1KB9521 588 - 588 aa - 588 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9674+/-0.00078; mu= 13.2984+/- 0.048
mean_var=141.5187+/-30.594, 0's: 0 Z-trim(113.1): 27 B-trim: 1427 in 2/50
Lambda= 0.107812
statistics sampled from 13729 (13753) to 13729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.422), width: 16
Scan time: 4.150
The best scores are: opt bits E(32554)
CCDS8563.1 GPR162 gene_id:27239|Hs108|chr12 ( 588) 4003 634.1 1.5e-181
CCDS44819.1 GPR162 gene_id:27239|Hs108|chr12 ( 304) 2092 336.6 2.7e-92
CCDS64.1 GPR153 gene_id:387509|Hs108|chr1 ( 609) 969 162.2 1.7e-39
>>CCDS8563.1 GPR162 gene_id:27239|Hs108|chr12 (588 aa)
initn: 4003 init1: 4003 opt: 4003 Z-score: 3373.1 bits: 634.1 E(32554): 1.5e-181
Smith-Waterman score: 4003; 99.8% identity (99.8% similar) in 588 aa overlap (1-588:1-588)
10 20 30 40 50 60
pF1KB9 MARGGAGAEEASLRSNALSWLACGLLALLANAWIILSISAKQQKHKPLELLLCFLAGTHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MARGGAGAEEASLRSNALSWLACGLLALLANAWIILSISAKQQKHKPLELLLCFLAGTHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LMAAVPLTTFAVVQLRRQASSDYDWNESICKVFVSTYYTLALATCFTVASLSYHRMWMVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LMAAVPLTTFAVVQLRRQASSDYDWNESICKVFVSTYYTLALATCFTVASLSYHRMWMVR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 WPVNYRLSNAKKQALHAVMGIWMVSFILSTLPSIGWHNNGERYYARGCQFIVSKIGLGFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 WPVNYRLSNAKKQALHAVMGIWMVSFILSTLPSIGWHNNGERYYARGCQFIVSKIGLGFG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VCFSLLLLGGIVMGLVCVAITFYQTLWARPRRARQARRVGGGGGTKAGGPGALGTRPAFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 VCFSLLLLGGIVMGLVCVAITFYQTLWARPRRARQARRVGGGGGTKAGGPGALGTRPAFE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VPAIVVEDARGKRRSSLDGSESAKTSLQVTNLVSAIVFLYDSLTGVPILVVSFFSLKSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 VPAIVVEDARGKRRSSLDGSESAKTSLQVTNLVSAIVFLYDSLTGVPILVVSFFSLKSDS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 APPWMVLAVLWCSMAQTLLLPSFIWSCERYRADVRTVWEQCVAIMSEEDGDDDGGCDDYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 APPWMVLAVLWCSMAQTLLLPSFIWSCERYRADVRTVWEQCVAIMSEEDGDDDGGCDDYA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 EGRVCKVRFDANGATGPGSRDPAQVKLLPGRHMLFPPLERVHYLQVPLSRRLSHDETNIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 EGRVCKVRFDANGATGPGSRDPAQVKLLPGRHMLFPPLERVHYLQVPLSRRLSHDETNIF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 STPREPGSFLHKWSSSDDIRVLPAQSRALGGPPEYLGQGHRLEDEEDEEEAEGGGLASLR
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS85 STPREPGSFLHKWSSSDDIRVLPAQSRALGGPPEYLGQRHRLEDEEDEEEAEGGGLASLR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 QFLESGVLGSGGGPPRGPGFFREEITTFIDETPLPSPTASPGHSPRRPRPLGLSPRRLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QFLESGVLGSGGGPPRGPGFFREEITTFIDETPLPSPTASPGHSPRRPRPLGLSPRRLSL
490 500 510 520 530 540
550 560 570 580
pF1KB9 GSPESRAVGLPLGLSAGRRCSLTGGEESARAWGGSWGPGNPIFPQLTL
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 GSPESRAVGLPLGLSAGRRCSLTGGEESARAWGGSWGPGNPIFPQLTL
550 560 570 580
>>CCDS44819.1 GPR162 gene_id:27239|Hs108|chr12 (304 aa)
initn: 2092 init1: 2092 opt: 2092 Z-score: 1770.6 bits: 336.6 E(32554): 2.7e-92
Smith-Waterman score: 2092; 99.7% identity (99.7% similar) in 299 aa overlap (290-588:6-304)
260 270 280 290 300 310
pF1KB9 SESAKTSLQVTNLVSAIVFLYDSLTGVPILVVSFFSLKSDSAPPWMVLAVLWCSMAQTLL
::::::::::::::::::::::::::::::
CCDS44 MLSTGVVSFFSLKSDSAPPWMVLAVLWCSMAQTLL
10 20 30
320 330 340 350 360 370
pF1KB9 LPSFIWSCERYRADVRTVWEQCVAIMSEEDGDDDGGCDDYAEGRVCKVRFDANGATGPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPSFIWSCERYRADVRTVWEQCVAIMSEEDGDDDGGCDDYAEGRVCKVRFDANGATGPGS
40 50 60 70 80 90
380 390 400 410 420 430
pF1KB9 RDPAQVKLLPGRHMLFPPLERVHYLQVPLSRRLSHDETNIFSTPREPGSFLHKWSSSDDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RDPAQVKLLPGRHMLFPPLERVHYLQVPLSRRLSHDETNIFSTPREPGSFLHKWSSSDDI
100 110 120 130 140 150
440 450 460 470 480 490
pF1KB9 RVLPAQSRALGGPPEYLGQGHRLEDEEDEEEAEGGGLASLRQFLESGVLGSGGGPPRGPG
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS44 RVLPAQSRALGGPPEYLGQRHRLEDEEDEEEAEGGGLASLRQFLESGVLGSGGGPPRGPG
160 170 180 190 200 210
500 510 520 530 540 550
pF1KB9 FFREEITTFIDETPLPSPTASPGHSPRRPRPLGLSPRRLSLGSPESRAVGLPLGLSAGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FFREEITTFIDETPLPSPTASPGHSPRRPRPLGLSPRRLSLGSPESRAVGLPLGLSAGRR
220 230 240 250 260 270
560 570 580
pF1KB9 CSLTGGEESARAWGGSWGPGNPIFPQLTL
:::::::::::::::::::::::::::::
CCDS44 CSLTGGEESARAWGGSWGPGNPIFPQLTL
280 290 300
>>CCDS64.1 GPR153 gene_id:387509|Hs108|chr1 (609 aa)
initn: 945 init1: 692 opt: 969 Z-score: 822.5 bits: 162.2 E(32554): 1.7e-39
Smith-Waterman score: 1611; 47.0% identity (71.2% similar) in 593 aa overlap (8-579:2-564)
10 20 30 40 50 60
pF1KB9 MARGGAGAEEASLRSNALSWLACGLLALLANAWIILSISAKQQKHKPLELLLCFLAGTHI
..: : ..:..::.:: :.:::::: :::..:::.: ::::.::: ::.::.
CCDS64 MSDERRLPGSAVGWLVCGGLSLLANAWGILSVGAKQKKWKPLEFLLCTLAATHM
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 LMAAVPLTTFAVVQLRRQASSDYDWNESICKVFVSTYYTLALATCFTVASLSYHRMWMVR
: .:::..:..::::::: :..:::..:::::::.:::.:::::.:.::::::::::
CCDS64 LNVAVPIATYSVVQLRRQ-RPDFEWNEGLCKVFVSTFYTLTLATCFSVTSLSYHRMWMVC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 WPVNYRLSNAKKQALHAVMGIWMVSFILSTLPSIGWHNNGERYYARGCQFIVSKIGLGFG
::::::::::::::.:.::::::::::::.::..:::...::.:..::.:::..::::::
CCDS64 WPVNYRLSNAKKQAVHTVMGIWMVSFILSALPAVGWHDTSERFYTHGCRFIVAEIGLGFG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB9 VCFSLLLLGGIVMGLVCVAITFYQTLWARPRRARQARRVGGGGGTKAGGPGALGTRPAFE
::: ::. :...::..:.::...::: .. .::: : ::
CCDS64 VCFLLLVGGSVAMGVICTAIALFQTLAVQ--VGRQA------------------DRRAFT
180 190 200 210
250 260 270 280 290 300
pF1KB9 VPAIVVEDARGKRRSSLDGSESAKTSLQVTNLVSAIVFLYDSLTGVPILVVSFFSLKSDS
::.::::::.::::::.:::: ::::::.:.::..:::.:: : : :.::::: ::..:.
CCDS64 VPTIVVEDAQGKRRSSIDGSEPAKTSLQTTGLVTTIVFIYDCLMGFPVLVVSFSSLRADA
220 230 240 250 260 270
310 320 330 340 350
pF1KB9 APPWMVLAVLWCSMAQTLLLPSFIWSCERYRADVRTVWEQCVAIMS-EEDGDDD----GG
. :::.: :::::.::.:::: :.:.:.:::::...: :.:.:.:. .:..::. ::
CCDS64 SAPWMALCVLWCSVAQALLLPVFLWACDRYRADLKAVREKCMALMANDEESDDETSLEGG
280 290 300 310 320 330
360 370 380 390 400 410
pF1KB9 CD-DYAEGRVCKVRFDANGATGPGSRDPAQVKLLPGRHMLFP--PLE--RVHYLQVPLSR
. : . : . .. .. : : .:.: ::. ...::::: .:
CCDS64 ISPDLVLERSLDYGYGGDFVALDRMAKYEISALEGGLPQLYPLRPLQEDKMQYLQVPPTR
340 350 360 370 380 390
420 430 440 450 460 470
pF1KB9 RLSHDETNIFSTPREPGSFLHKWSSSDDIRVLPAQSRALGGPPEYLGQGHRLEDEEDEEE
:.:::....... : .:: .:.:..:. .: :. .:: . .. . .. .
CCDS64 RFSHDDADVWAAVPLP-AFLPRWGSGEDLAAL-AHLVLPAGPERRRASLLAFAEDAPPSR
400 410 420 430 440 450
480 490 500 510 520
pF1KB9 AE---GGGLASLR-QFLESGVLG---SGGGPPR---GPGFFREEITTFIDETPLPSPTAS
:. . .: ::: . :.:: : : : :: ::: . . : : .
CCDS64 ARRRSAESLLSLRPSALDSGPRGARDSPPGSPRRRPGPGPRSASASLLPDAFALTAFECE
460 470 480 490 500 510
530 540 550 560 570
pF1KB9 PGHSPRRPRPLGLSPRRLSLGSPESRAVG-LPLGLSAGRRCSLTGGEESARAWGGSWGPG
: : : :. .: ..:.. : : :...: : . ::.. .:: ::
CCDS64 PQALRRPPGPFPAAP-----AAPDGADPGEAPTPPSSAQRSP--GPRPSAHSHAGSLRPG
520 530 540 550 560
580
pF1KB9 NPIFPQLTL
CCDS64 LSASWGEPGGLRAAGGGGSTSSFLSSPSESSGYATLHSDSLGSAS
570 580 590 600
588 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:06:49 2016 done: Fri Nov 4 17:06:50 2016
Total Scan time: 4.150 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]