Result of FASTA (omim) for
pF1KB9518
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9518, 597 aa
1>>>pF1KB9518 597 - 597 aa - 597 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2594+/-0.0003; mu= 15.6220+/- 0.019
mean_var=100.7459+/-20.108, 0's: 0 Z-trim(120.0): 42 B-trim: 0 in 0/53
Lambda= 0.127779
statistics sampled from 34725 (34768) to 34725 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.408), width: 16
Scan time: 7.160
The best scores are: opt bits E(85289)
NP_003791 (OMIM: 603512) mRNA-capping enzyme isofo ( 597) 4152 775.7 0
XP_016866890 (OMIM: 603512) PREDICTED: mRNA-cappin ( 603) 4130 771.7 0
XP_016866891 (OMIM: 603512) PREDICTED: mRNA-cappin ( 596) 3474 650.7 3.9e-186
NP_001273355 (OMIM: 603512) mRNA-capping enzyme is ( 574) 2940 552.3 1.6e-156
NP_001273357 (OMIM: 603512) mRNA-capping enzyme is ( 514) 2516 474.1 5e-133
NP_003575 (OMIM: 603092) RNA/RNP complex-1-interac ( 377) 333 71.6 5.5e-12
>>NP_003791 (OMIM: 603512) mRNA-capping enzyme isoform a (597 aa)
initn: 4152 init1: 4152 opt: 4152 Z-score: 4138.2 bits: 775.7 E(85289): 0
Smith-Waterman score: 4152; 100.0% identity (100.0% similar) in 597 aa overlap (1-597:1-597)
10 20 30 40 50 60
pF1KB9 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 SRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 LLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYN
490 500 510 520 530 540
550 560 570 580 590
pF1KB9 TAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPRPLT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPRPLT
550 560 570 580 590
>>XP_016866890 (OMIM: 603512) PREDICTED: mRNA-capping en (603 aa)
initn: 4224 init1: 3100 opt: 4130 Z-score: 4116.2 bits: 771.7 E(85289): 0
Smith-Waterman score: 4130; 99.0% identity (99.0% similar) in 603 aa overlap (1-597:1-603)
10 20 30 40 50 60
pF1KB9 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
370 380 390 400 410 420
430 440 450 460 470
pF1KB9 SRKLLEGNFAKEVSHEMDGLIFQPTG------KYKPGRCDDILKWKPPSLNSVDFRLKIT
:::::::::::::::::::::::::: ::::::::::::::::::::::::::::
XP_016 SRKLLEGNFAKEVSHEMDGLIFQPTGDYWLFKKYKPGRCDDILKWKPPSLNSVDFRLKIT
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB9 RMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKS
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB9 FPNAYNTAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FPNAYNTAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPR
550 560 570 580 590 600
pF1KB9 PLT
:::
XP_016 PLT
>>XP_016866891 (OMIM: 603512) PREDICTED: mRNA-capping en (596 aa)
initn: 3568 init1: 3100 opt: 3474 Z-score: 3462.7 bits: 650.7 E(85289): 3.9e-186
Smith-Waterman score: 3474; 97.9% identity (98.6% similar) in 514 aa overlap (1-508:1-514)
10 20 30 40 50 60
pF1KB9 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
370 380 390 400 410 420
430 440 450 460 470
pF1KB9 SRKLLEGNFAKEVSHEMDGLIFQPTG------KYKPGRCDDILKWKPPSLNSVDFRLKIT
:::::::::::::::::::::::::: ::::::::::::::::::::::::::::
XP_016 SRKLLEGNFAKEVSHEMDGLIFQPTGDYWLFKKYKPGRCDDILKWKPPSLNSVDFRLKIT
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB9 RMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKS
:::::::::::::::::::::::::::: ....:
XP_016 RMGGEGLLPQNVGLLYVGGYERPFAQIKNSEQVKSTGDYNQTGFPKRTASTPRLEIKRIQ
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB9 FPNAYNTAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPR
XP_016 HTIFPRCGKNKIFLSMKHKNLWNQKGLSRESDPGGRTGYPEGRMQCHSGGRVRTES
550 560 570 580 590
>>NP_001273355 (OMIM: 603512) mRNA-capping enzyme isofor (574 aa)
initn: 3985 init1: 2940 opt: 2940 Z-score: 2930.9 bits: 552.3 E(85289): 1.6e-156
Smith-Waterman score: 3943; 96.1% identity (96.1% similar) in 597 aa overlap (1-597:1-574)
10 20 30 40 50 60
pF1KB9 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 SRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEG
::: ::::::::::::::::::::::::::::::::::
NP_001 SRK-----------------------KYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEG
430 440 450
490 500 510 520 530 540
pF1KB9 LLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYN
460 470 480 490 500 510
550 560 570 580 590
pF1KB9 TAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPRPLT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPRPLT
520 530 540 550 560 570
>>NP_001273357 (OMIM: 603512) mRNA-capping enzyme isofor (514 aa)
initn: 3561 init1: 2516 opt: 2516 Z-score: 2509.2 bits: 474.1 E(85289): 5e-133
Smith-Waterman score: 3519; 95.7% identity (95.7% similar) in 537 aa overlap (61-597:1-514)
40 50 60 70 80 90
pF1KB9 LGPRYDSQVAEENRFHPSMLSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQ
::::::::::::::::::::::::::::::
NP_001 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQ
10 20 30
100 110 120 130 140 150
pF1KB9 CKGHGECPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CKGHGECPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIE
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB9 AAVATFAQARPPGIYKGDYLKELFRRYGDIEEAPPPPLLPDWCFEDDEDEDEDEDGKKES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAVATFAQARPPGIYKGDYLKELFRRYGDIEEAPPPPLLPDWCFEDDEDEDEDEDGKKES
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB9 EPGSSASFGKRRKERLKLGAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPGSSASFGKRRKERLKLGAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPG
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB9 AQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFR
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB9 KDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIIS
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB9 PRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLLEGNFAKEVSHEMDGLIFQPTGKYKP
::::::::::::::::::::::::::::::::: ::::
NP_001 PRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRK-----------------------KYKP
340 350 360
460 470 480 490 500 510
pF1KB9 GRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQY
370 380 390 400 410 420
520 530 540 550 560 570
pF1KB9 DNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRCTAASQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRCTAASQ
430 440 450 460 470 480
580 590
pF1KB9 GQKRKHHLDPDTELMPPPPPKRPRPLT
:::::::::::::::::::::::::::
NP_001 GQKRKHHLDPDTELMPPPPPKRPRPLT
490 500 510
>>NP_003575 (OMIM: 603092) RNA/RNP complex-1-interacting (377 aa)
initn: 257 init1: 169 opt: 333 Z-score: 336.2 bits: 71.6 E(85289): 5.5e-12
Smith-Waterman score: 333; 34.1% identity (61.3% similar) in 173 aa overlap (4-173:76-246)
10 20 30
pF1KB9 MAHNKIPPRWLNCPRRGQPVAG-RFLPLKTMLG
:.:: :: . :: . : ::. .:. :
NP_003 THMSQWHHPRSGWGRRRDFSGRSSAKKKGGNHIPERWKDYLPVGQRMPGTRFIAFKVPLQ
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB9 PRYDSQVAEENRFHPSMLSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCK
.....: :. : : : : .. . ..::..::: :.:.: .:. : . :.:.
NP_003 KSFEKKLAPEECFSPLDLFNKIREQNEELGLIIDLTYTQRYYKPEDLP-ETVPYLKIFTV
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB9 GHGECPTTENTETFIRLCERFNERNPP--ELIGVHCTHGFNRTGFLICAFLVEKMDWSIE
:: . : :. : . . : ..: .:::::::::.::::.::: .:.. .
NP_003 GH-QVPDDETIFKFKHAVNGFLKENKDNDKLIGVHCTHGLNRTGYLICRYLIDVEGVRPD
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB9 AAVATFAQARPPGIYKGDYLKELFRRYGDIEEAPPPPLLPDWCFEDDEDEDEDEDGKKES
:. : . : . . .:...:
NP_003 DAIELFNRCRGHCLERQNYIEDLQNGPIRKNWNSSVPRSSDFEDSAHLMQPVHNKPVKQG
230 240 250 260 270 280
597 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:10:59 2016 done: Fri Nov 4 00:11:00 2016
Total Scan time: 7.160 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]