FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9518, 597 aa
  1>>>pF1KB9518 597 - 597 aa - 597 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3518+/-0.000726; mu= 14.9285+/- 0.045
 mean_var=94.7517+/-18.775, 0's: 0 Z-trim(112.1): 24  B-trim: 0 in 0/50
 Lambda= 0.131759
 statistics sampled from 12936 (12948) to 12936 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.398), width:  16
 Scan time:  3.340

The best scores are:                                      opt bits E(32554)
CCDS5017.1 RNGTT gene_id:8732|Hs108|chr6           ( 597) 4152 799.3       0
CCDS69153.1 RNGTT gene_id:8732|Hs108|chr6          ( 574) 2940 568.9 6.2e-162
CCDS1928.2 DUSP11 gene_id:8446|Hs108|chr2          ( 377)  333 73.2 6.6e-13


>>CCDS5017.1 RNGTT gene_id:8732|Hs108|chr6                (597 aa)
 initn: 4152 init1: 4152 opt: 4152  Z-score: 4265.6  bits: 799.3 E(32554):    0
Smith-Waterman score: 4152; 100.0% identity (100.0% similar) in 597 aa overlap (1-597:1-597)

               10        20        30        40        50        60
pF1KB9 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 SRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 SRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 LLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 LLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYN
              490       500       510       520       530       540

              550       560       570       580       590       
pF1KB9 TAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPRPLT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 TAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPRPLT
              550       560       570       580       590       

>>CCDS69153.1 RNGTT gene_id:8732|Hs108|chr6               (574 aa)
 initn: 3985 init1: 2940 opt: 2940  Z-score: 3020.7  bits: 568.9 E(32554): 6.2e-162
Smith-Waterman score: 3943; 96.1% identity (96.1% similar) in 597 aa overlap (1-597:1-574)

               10        20        30        40        50        60
pF1KB9 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 SRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEG
       :::                       ::::::::::::::::::::::::::::::::::
CCDS69 SRK-----------------------KYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEG
                                     430       440       450       

              490       500       510       520       530       540
pF1KB9 LLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYN
       460       470       480       490       500       510       

              550       560       570       580       590       
pF1KB9 TAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPRPLT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPRPLT
       520       530       540       550       560       570    

>>CCDS1928.2 DUSP11 gene_id:8446|Hs108|chr2               (377 aa)
 initn: 257 init1: 169 opt: 333  Z-score: 345.2  bits: 73.2 E(32554): 6.6e-13
Smith-Waterman score: 333; 34.1% identity (61.3% similar) in 173 aa overlap (4-173:76-246)

                                          10        20         30  
pF1KB9                            MAHNKIPPRWLNCPRRGQPVAG-RFLPLKTMLG
                                     :.:: :: .    :: . : ::. .:. : 
CCDS19 THMSQWHHPRSGWGRRRDFSGRSSAKKKGGNHIPERWKDYLPVGQRMPGTRFIAFKVPLQ
          50        60        70        80        90       100     

             40        50        60        70        80        90  
pF1KB9 PRYDSQVAEENRFHPSMLSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCK
         .....: :. : :  : : ..  . ..::..::: :.:.:  .:.  : . :.:.   
CCDS19 KSFEKKLAPEECFSPLDLFNKIREQNEELGLIIDLTYTQRYYKPEDLP-ETVPYLKIFTV
         110       120       130       140       150        160    

            100       110         120       130       140       150
pF1KB9 GHGECPTTENTETFIRLCERFNERNPP--ELIGVHCTHGFNRTGFLICAFLVEKMDWSIE
       :: . :  :.   : .  . : ..:    .:::::::::.::::.::: .:..      .
CCDS19 GH-QVPDDETIFKFKHAVNGFLKENKDNDKLIGVHCTHGLNRTGYLICRYLIDVEGVRPD
           170       180       190       200       210       220   

              160       170       180       190       200       210
pF1KB9 AAVATFAQARPPGIYKGDYLKELFRRYGDIEEAPPPPLLPDWCFEDDEDEDEDEDGKKES
        :.  : . :   . . .:...:                                     
CCDS19 DAIELFNRCRGHCLERQNYIEDLQNGPIRKNWNSSVPRSSDFEDSAHLMQPVHNKPVKQG
           230       240       250       260       270       280   




597 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:10:58 2016 done: Fri Nov  4 00:10:59 2016
 Total Scan time:  3.340 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]