Result of FASTA (ccds) for
pF1KB9513
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9513, 480 aa
1>>>pF1KB9513 480 - 480 aa - 480 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4045+/-0.000868; mu= 17.7721+/- 0.052
mean_var=70.4136+/-13.962, 0's: 0 Z-trim(106.7): 18 B-trim: 0 in 0/50
Lambda= 0.152843
statistics sampled from 9131 (9147) to 9131 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.281), width: 16
Scan time: 2.940
The best scores are: opt bits E(32554)
CCDS3116.1 PXYLP1 gene_id:92370|Hs108|chr3 ( 480) 3293 735.3 3.3e-212
CCDS63797.1 PXYLP1 gene_id:92370|Hs108|chr3 ( 442) 3057 683.3 1.4e-196
CCDS928.1 ACP6 gene_id:51205|Hs108|chr1 ( 428) 259 66.3 7.4e-11
>>CCDS3116.1 PXYLP1 gene_id:92370|Hs108|chr3 (480 aa)
initn: 3293 init1: 3293 opt: 3293 Z-score: 3923.3 bits: 735.3 E(32554): 3.3e-212
Smith-Waterman score: 3293; 100.0% identity (100.0% similar) in 480 aa overlap (1-480:1-480)
10 20 30 40 50 60
pF1KB9 MLFRNRFLLLLALAALLAFVSLSLQFFHLIPVSTPKNGMSSKSRKRIMPDPVTEPPVTDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLFRNRFLLLLALAALLAFVSLSLQFFHLIPVSTPKNGMSSKSRKRIMPDPVTEPPVTDP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 VYEALLYCNIPSVAERSMEGHAPHHFKLVSVHVFIRHGDRYPLYVIPKTKRPEIDCTLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VYEALLYCNIPSVAERSMEGHAPHHFKLVSVHVFIRHGDRYPLYVIPKTKRPEIDCTLVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 NRKPYHPKLEAFISHMSKGSGASFESPLNSLPLYPNHPLCEMGELTQTGVVQHLQNGQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NRKPYHPKLEAFISHMSKGSGASFESPLNSLPLYPNHPLCEMGELTQTGVVQHLQNGQLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 RDIYLKKHKLLPNDWSADQLYLETTGKSRTLQSGLALLYGFLPDFDWKKIYFRHQPSALF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RDIYLKKHKLLPNDWSADQLYLETTGKSRTLQSGLALLYGFLPDFDWKKIYFRHQPSALF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 CSGSCYCPVRNQYLEKEQRRQYLLRLKNSQLEKTYGEMAKIVDVPTKQLRAANPIDSMLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CSGSCYCPVRNQYLEKEQRRQYLLRLKNSQLEKTYGEMAKIVDVPTKQLRAANPIDSMLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 HFCHNVSFPCTRNGCVDMEHFKVIKTHQIEDERERREKKLYFGYSLLGAHPILNQTIGRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HFCHNVSFPCTRNGCVDMEHFKVIKTHQIEDERERREKKLYFGYSLLGAHPILNQTIGRM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 QRATEGRKEELFALYSAHDVTLSPVLSALGLSEARFPRFAARLIFELWQDREKPSEHSVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QRATEGRKEELFALYSAHDVTLSPVLSALGLSEARFPRFAARLIFELWQDREKPSEHSVR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 ILYNGVDVTFHTSFCQDHHKRSPKPMCPLENLVRFVKRDMFVALGGSGTNYYDACHREGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ILYNGVDVTFHTSFCQDHHKRSPKPMCPLENLVRFVKRDMFVALGGSGTNYYDACHREGF
430 440 450 460 470 480
>>CCDS63797.1 PXYLP1 gene_id:92370|Hs108|chr3 (442 aa)
initn: 3057 init1: 3057 opt: 3057 Z-score: 3642.6 bits: 683.3 E(32554): 1.4e-196
Smith-Waterman score: 3057; 100.0% identity (100.0% similar) in 442 aa overlap (39-480:1-442)
10 20 30 40 50 60
pF1KB9 LLLALAALLAFVSLSLQFFHLIPVSTPKNGMSSKSRKRIMPDPVTEPPVTDPVYEALLYC
::::::::::::::::::::::::::::::
CCDS63 MSSKSRKRIMPDPVTEPPVTDPVYEALLYC
10 20 30
70 80 90 100 110 120
pF1KB9 NIPSVAERSMEGHAPHHFKLVSVHVFIRHGDRYPLYVIPKTKRPEIDCTLVANRKPYHPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NIPSVAERSMEGHAPHHFKLVSVHVFIRHGDRYPLYVIPKTKRPEIDCTLVANRKPYHPK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 LEAFISHMSKGSGASFESPLNSLPLYPNHPLCEMGELTQTGVVQHLQNGQLLRDIYLKKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LEAFISHMSKGSGASFESPLNSLPLYPNHPLCEMGELTQTGVVQHLQNGQLLRDIYLKKH
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 KLLPNDWSADQLYLETTGKSRTLQSGLALLYGFLPDFDWKKIYFRHQPSALFCSGSCYCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KLLPNDWSADQLYLETTGKSRTLQSGLALLYGFLPDFDWKKIYFRHQPSALFCSGSCYCP
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 VRNQYLEKEQRRQYLLRLKNSQLEKTYGEMAKIVDVPTKQLRAANPIDSMLCHFCHNVSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VRNQYLEKEQRRQYLLRLKNSQLEKTYGEMAKIVDVPTKQLRAANPIDSMLCHFCHNVSF
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 PCTRNGCVDMEHFKVIKTHQIEDERERREKKLYFGYSLLGAHPILNQTIGRMQRATEGRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PCTRNGCVDMEHFKVIKTHQIEDERERREKKLYFGYSLLGAHPILNQTIGRMQRATEGRK
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB9 EELFALYSAHDVTLSPVLSALGLSEARFPRFAARLIFELWQDREKPSEHSVRILYNGVDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EELFALYSAHDVTLSPVLSALGLSEARFPRFAARLIFELWQDREKPSEHSVRILYNGVDV
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB9 TFHTSFCQDHHKRSPKPMCPLENLVRFVKRDMFVALGGSGTNYYDACHREGF
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TFHTSFCQDHHKRSPKPMCPLENLVRFVKRDMFVALGGSGTNYYDACHREGF
400 410 420 430 440
>>CCDS928.1 ACP6 gene_id:51205|Hs108|chr1 (428 aa)
initn: 195 init1: 122 opt: 259 Z-score: 308.3 bits: 66.3 E(32554): 7.4e-11
Smith-Waterman score: 264; 24.6% identity (52.8% similar) in 407 aa overlap (61-450:16-396)
40 50 60 70 80
pF1KB9 PVSTPKNGMSSKSRKRIMPDPVTEPPVTDPVYEALLYC---NIPSVAE-RSMEGHAP---
: .: :: ..:: . .:. :
CCDS92 MITGVFSMRLWTPVGVLTSLAYCLHQRRVALAELQEADGQCPVDR
10 20 30 40
90 100 110 120 130 140
pF1KB9 HHFKLVSVHVFIRHGDRYPLYVIPKTKRPEIDCTLVANRKPYHPKLEAFISHMSKGSGAS
.:: :.: .::: : :: .: .. : . :. . : . ... ..... .: .
CCDS92 SLLKLKMVQVVFRHGARSPLKPLPLEEQVEWNPQLL--EVPPQTQFDYTVTNLA--GGPK
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB9 FESPLNSLPLYPNHPL---CEMGELTQTGVVQHLQNGQLLRDIYLKKHKLLPNDWSADQL
:: .: : . : :.::..:. : . :. :: :.. .: .. ...
CCDS92 PYSPYDSQ--YHETTLKGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPTFNPQEV
110 120 130 140 150
210 220 230 240 250
pF1KB9 YLETTGKSRTLQSGLALLYGFLPDFDWKK-----IYFRHQPSALFCSGSCYCPVRNQYLE
....:. :.:.: :: :. :. .: :. . : .. . : : .
CCDS92 FIRSTNIFRNLESTRCLLAGL---FQCQKEGPIIIHTDEADSEVLYPNYQSCWSLRQRTR
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB9 KEQRRQYLLRLKNSQLEKTYGEMAKIVDVPTKQLRAANPIDSMLCHFCHNV-SFPCTRNG
... : . .:.:. .:. .: . .. .:.. . ::. : : .
CCDS92 GRRQTASLQPGISEDLKKVKDRMG--ID-SSDKVDFFILLDNVAAEQAHNLPSCPMLKRF
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB9 CVDMEHFKVIKTHQIEDERERREKKLYFGYSLLGAHPILNQTIGRMQRATEGRKEELFAL
.:. : . : ...:. .. : : : . .. . :. :: : . . :
CCDS92 ARMIEQRAVDTSLYILPKEDRESLQMAVGPFL---HILESNLLKAMDSATAPDKIRKLYL
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB9 YSAHDVTLSPVLSALGLSEARFPRFAARLIFELWQDREKPSEHSVRILYNGVDVTFHTSF
:.:::::. :.: .::. . ..: ::. : .::.: :. .: :.. :.:
CCDS92 YAAHDVTFIPLLMTLGIFDHKWPPFAVDLTMELYQHLES-KEWFVQLYYHG---------
340 350 360 370 380
440 450 460 470 480
pF1KB9 CQDHHKRS-PKPMCPLENLVRFVKRDMFVALGGSGTNYYDACHREGF
... :. : .:::.
CCDS92 -KEQVPRGCPDGLCPLDMFLNAMSVYTLSPEKYHALCSQTQVMEVGNEE
390 400 410 420
480 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:09:01 2016 done: Fri Nov 4 00:09:02 2016
Total Scan time: 2.940 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]