FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9511, 386 aa
  1>>>pF1KB9511 386 - 386 aa - 386 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0375+/-0.000674; mu= 14.1063+/- 0.041
 mean_var=82.8865+/-16.215, 0's: 0 Z-trim(112.0): 19  B-trim: 2 in 1/50
 Lambda= 0.140874
 statistics sampled from 12858 (12874) to 12858 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.395), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS44678.1 PPME1 gene_id:51400|Hs108|chr11        ( 386) 2599 537.4 8.2e-153
CCDS60891.1 PPME1 gene_id:51400|Hs108|chr11        ( 400) 1826 380.3 1.7e-105


>>CCDS44678.1 PPME1 gene_id:51400|Hs108|chr11             (386 aa)
 initn: 2599 init1: 2599 opt: 2599  Z-score: 2857.0  bits: 537.4 E(32554): 8.2e-153
Smith-Waterman score: 2599; 100.0% identity (100.0% similar) in 386 aa overlap (1-386:1-386)

               10        20        30        40        50        60
pF1KB9 MSALEKSMHLGRLPSRPPLPGSGGSQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSALEKSMHLGRLPSRPPLPGSGGSQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ITSPEGSKSIVEGIIEEEEEDEEGSESISKRKKEDDMETKKDHPYTWRIELAKTEKYWDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ITSPEGSKSIVEGIIEEEEEDEEGSESISKRKKEDDMETKKDHPYTWRIELAKTEKYWDG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 WFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVA
              310       320       330       340       350       360

              370       380      
pF1KB9 EAVATFLIRHRFAEPIGGFQCVFPGC
       ::::::::::::::::::::::::::
CCDS44 EAVATFLIRHRFAEPIGGFQCVFPGC
              370       380      

>>CCDS60891.1 PPME1 gene_id:51400|Hs108|chr11             (400 aa)
 initn: 1826 init1: 1826 opt: 1826  Z-score: 2007.7  bits: 380.3 E(32554): 1.7e-105
Smith-Waterman score: 2561; 96.5% identity (96.5% similar) in 400 aa overlap (1-386:1-400)

               10        20        30        40        50        60
pF1KB9 MSALEKSMHLGRLPSRPPLPGSGGSQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MSALEKSMHLGRLPSRPPLPGSGGSQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG
              190       200       210       220       230       240

              250       260       270                     280      
pF1KB9 ITSPEGSKSIVEGIIEEEEEDEEGSESISKRKKEDDME--------------TKKDHPYT
       ::::::::::::::::::::::::::::::::::::::              ::::::::
CCDS60 ITSPEGSKSIVEGIIEEEEEDEEGSESISKRKKEDDMEGLPSETQNLLLFLQTKKDHPYT
              250       260       270       280       290       300

        290       300       310       320       330       340      
pF1KB9 WRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQMQGKFQMQVLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 WRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQMQGKFQMQVLPQ
              310       320       330       340       350       360

        350       360       370       380      
pF1KB9 CGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC
       ::::::::::::::::::::::::::::::::::::::::
CCDS60 CGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC
              370       380       390       400




386 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:07:29 2016 done: Fri Nov  4 00:07:29 2016
 Total Scan time:  2.370 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]