Result of FASTA (ccds) for
pF1KB9503
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9503, 1268 aa
1>>>pF1KB9503 1268 - 1268 aa - 1268 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4305+/-0.00108; mu= 17.3935+/- 0.065
mean_var=85.4138+/-16.550, 0's: 0 Z-trim(103.9): 47 B-trim: 18 in 1/52
Lambda= 0.138775
statistics sampled from 7617 (7643) to 7617 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.573), E-opt: 0.2 (0.235), width: 16
Scan time: 3.200
The best scores are: opt bits E(32554)
CCDS2547.1 HDLBP gene_id:3069|Hs108|chr2 (1268) 8217 1656.0 0
CCDS58760.1 HDLBP gene_id:3069|Hs108|chr2 (1235) 6194 1251.0 0
>>CCDS2547.1 HDLBP gene_id:3069|Hs108|chr2 (1268 aa)
initn: 8217 init1: 8217 opt: 8217 Z-score: 8883.7 bits: 1656.0 E(32554): 0
Smith-Waterman score: 8217; 100.0% identity (100.0% similar) in 1268 aa overlap (1-1268:1-1268)
10 20 30 40 50 60
pF1KB9 MSSVAVLTQESFAEHRSGLVPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MSSVAVLTQESFAEHRSGLVPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 AGAWGNKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 AGAWGNKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KDQGLSIMVSGKLDAVMKARKDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 KDQGLSIMVSGKLDAVMKARKDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 ATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQDKRAVERLEVEKAFHPFIAGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 ATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQDKRAVERLEVEKAFHPFIAGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 YNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKTTTIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 YNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQLAQAVARIKKIYEEKKKKTTTIAV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 EVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISETVILRGEPEKLGQALTEVYAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 EVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISETVILRGEPEKLGQALTEVYAK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 ANSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVNVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 ANSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVNVA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 QEQIEGMVKDLINRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 QEQIEGMVKDLINRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 IRIEGDPQGVQQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 IRIEGDPQGVQQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 IINFPDPAQKSDIVQLRGPKNEVEKCTKYMQKMVADLVENSYSISVPIFKQFHKNIIGKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 IINFPDPAQKSDIVQLRGPKNEVEKCTKYMQKMVADLVENSYSISVPIFKQFHKNIIGKG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 GANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRILSIQKDLANIAEVEVSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 GANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRILSIQKDLANIAEVEVSI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 PAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 PAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 EEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARVIFPAAEDKDQDLITIIGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 EEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARVIFPAAEDKDQDLITIIGKE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 DAVREAQKELEALIQNLDNVVEDSMLVDPKHHRHFVIRRGQVLREIAEEYGGVMVSFPRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 DAVREAQKELEALIQNLDNVVEDSMLVDPKHHRHFVIRRGQVLREIAEEYGGVMVSFPRS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 GTQSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTLECAIPQKFHRSVMGPKGSRIQQIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 GTQSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTLECAIPQKFHRSVMGPKGSRIQQIT
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 RDFSVQIKFPDREENAVHSTEPVVQENGDEAGEGREAKDCDPGSPRRCDIIIISGRKEKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 RDFSVQIKFPDREENAVHSTEPVVQENGDEAGEGREAKDCDPGSPRRCDIIIISGRKEKC
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 EAAKEALEALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 EAAKEALEALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAI
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB9 TGLAANLDRAKAGLLERVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 TGLAANLDRAKAGLLERVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRL
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB9 EHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQMVSEDVPLDHRVHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 EHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQMVSEDVPLDHRVHA
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB9 RIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 RIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLAD
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB9 VVDSEALQVYMKPPAHEEAKAPSRGFVVRDAPWTASSSEKAPDMSSSEEFPSFGAQVAPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 VVDSEALQVYMKPPAHEEAKAPSRGFVVRDAPWTASSSEKAPDMSSSEEFPSFGAQVAPK
1210 1220 1230 1240 1250 1260
pF1KB9 TLPWGPKR
::::::::
CCDS25 TLPWGPKR
>>CCDS58760.1 HDLBP gene_id:3069|Hs108|chr2 (1235 aa)
initn: 5929 init1: 5929 opt: 6194 Z-score: 6695.0 bits: 1251.0 E(32554): 0
Smith-Waterman score: 7646; 94.6% identity (94.6% similar) in 1268 aa overlap (1-1268:37-1235)
10 20 30
pF1KB9 MSSVAVLTQESFAEHRSGLVPQQIKVATLN
::::::::::::::::::::::::::::::
CCDS58 DRWLFVATVMMHFVSIKSGFPGLCVGVRSTMSSVAVLTQESFAEHRSGLVPQQIKVATLN
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 SEEESDPPTYKDAFPPLPEKAACLESAQEPAGAWGNKIRPIKASVITQVFHVPLEERKYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SEEESDPPTYKDAFPPLPEKAACLESAQEPAGAWGNKIRPIKASVITQVFHVPLEERKYK
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB9 DMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKARKDIVARLQTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKARKDIVARLQTQ
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB9 ASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARH
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB9 EVLLISAEQDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EVLLISAEQDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVF
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB9 TGEKEQLAQAVARIKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVE
:::::::::::::::::::::
CCDS58 TGEKEQLAQAVARIKKIYEEK---------------------------------------
310 320
340 350 360 370 380 390
pF1KB9 IPPSDSISETVILRGEPEKLGQALTEVYAKANSFTVSSVAAPSWLHRFIIGKKGQNLAKI
::::::::::::::::::::::::::::::
CCDS58 ------------------------------ANSFTVSSVAAPSWLHRFIIGKKGQNLAKI
330 340 350
400 410 420 430 440 450
pF1KB9 TQQMPKVHIEFTEGEDKITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHRHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TQQMPKVHIEFTEGEDKITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHRHL
360 370 380 390 400 410
460 470 480 490 500 510
pF1KB9 IGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENERTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENERTK
420 430 440 450 460 470
520 530 540 550 560 570
pF1KB9 DLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSDIVQLRGPKNEVEKCTKYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSDIVQLRGPKNEVEKCTKYM
480 490 500 510 520 530
580 590 600 610 620 630
pF1KB9 QKMVADLVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QKMVADLVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIIT
540 550 560 570 580 590
640 650 660 670 680 690
pF1KB9 GKRANCEAARSRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GKRANCEAARSRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHF
600 610 620 630 640 650
700 710 720 730 740 750
pF1KB9 PVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKI
660 670 680 690 700 710
760 770 780 790 800 810
pF1KB9 RKVRDSTGARVIFPAAEDKDQDLITIIGKEDAVREAQKELEALIQNLDNVVEDSMLVDPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RKVRDSTGARVIFPAAEDKDQDLITIIGKEDAVREAQKELEALIQNLDNVVEDSMLVDPK
720 730 740 750 760 770
820 830 840 850 860 870
pF1KB9 HHRHFVIRRGQVLREIAEEYGGVMVSFPRSGTQSDKVTLKGAKDCVEAAKKRIQEIIEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 HHRHFVIRRGQVLREIAEEYGGVMVSFPRSGTQSDKVTLKGAKDCVEAAKKRIQEIIEDL
780 790 800 810 820 830
880 890 900 910 920 930
pF1KB9 EAQVTLECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDREENAVHSTEPVVQENGDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EAQVTLECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDREENAVHSTEPVVQENGDE
840 850 860 870 880 890
940 950 960 970 980 990
pF1KB9 AGEGREAKDCDPGSPRRCDIIIISGRKEKCEAAKEALEALVPVTIEVEVPFDLHRYVIGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AGEGREAKDCDPGSPRRCDIIIISGRKEKCEAAKEALEALVPVTIEVEVPFDLHRYVIGQ
900 910 920 930 940 950
1000 1010 1020 1030 1040 1050
pF1KB9 KGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQAEQEDRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQAEQEDRAL
960 970 980 990 1000 1010
1060 1070 1080 1090 1100 1110
pF1KB9 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNT
1020 1030 1040 1050 1060 1070
1120 1130 1140 1150 1160 1170
pF1KB9 EAARDAILRIVGELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EAARDAILRIVGELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPD
1080 1090 1100 1110 1120 1130
1180 1190 1200 1210 1220 1230
pF1KB9 PNCVTVTGLPENVEEAIDHILNLEEEYLADVVDSEALQVYMKPPAHEEAKAPSRGFVVRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PNCVTVTGLPENVEEAIDHILNLEEEYLADVVDSEALQVYMKPPAHEEAKAPSRGFVVRD
1140 1150 1160 1170 1180 1190
1240 1250 1260
pF1KB9 APWTASSSEKAPDMSSSEEFPSFGAQVAPKTLPWGPKR
::::::::::::::::::::::::::::::::::::::
CCDS58 APWTASSSEKAPDMSSSEEFPSFGAQVAPKTLPWGPKR
1200 1210 1220 1230
1268 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:04:04 2016 done: Fri Nov 4 00:04:04 2016
Total Scan time: 3.200 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]