FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9498, 611 aa
  1>>>pF1KB9498 611 - 611 aa - 611 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8568+/-0.00102; mu= -4.1054+/- 0.062
 mean_var=343.9993+/-71.072, 0's: 0 Z-trim(115.2): 36  B-trim: 237 in 1/53
 Lambda= 0.069151
 statistics sampled from 15693 (15724) to 15693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.483), width:  16
 Scan time:  4.540

The best scores are:                                      opt bits E(32554)
CCDS41788.1 EIF4B gene_id:1975|Hs108|chr12         ( 611) 4199 432.8 6.5e-121
CCDS73474.1 EIF4B gene_id:1975|Hs108|chr12         ( 616) 4174 430.3 3.7e-120


>>CCDS41788.1 EIF4B gene_id:1975|Hs108|chr12              (611 aa)
 initn: 4199 init1: 4199 opt: 4199  Z-score: 2284.3  bits: 432.8 E(32554): 6.5e-121
Smith-Waterman score: 4199; 100.0% identity (100.0% similar) in 611 aa overlap (1-611:1-611)

               10        20        30        40        50        60
pF1KB9 MAASAKKKNKKGKTISLTDFLAEDGGTGGGSTYVSKPVSWADETDDLEGDVSTTWHSNDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAASAKKKNKKGKTISLTDFLAEDGGTGGGSTYVSKPVSWADETDDLEGDVSTTWHSNDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DVYRAPPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DVYRAPPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQDKDRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQDKDRD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYDSDRYRDGYRDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYDSDRYRDGYRDG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGDRYED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGDRYED
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSTRAASI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSTRAASI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERERSRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERERSRT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 GSESSQTGTSTTSSRNARRRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMPAPPPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GSESSQTGTSTTSSRNARRRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMPAPPPK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 ENAWVKRSSNPPARSQSSDTEQQSPTSGGGKVAPAQPSEEGPGRKDENKVDGMNAPKGQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ENAWVKRSSNPPARSQSSDTEQQSPTSGGGKVAPAQPSEEGPGRKDENKVDGMNAPKGQT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 GNSSRGPGDGGNRDHWKESDRKDGKKDQDSRSAPEPKKPEENPASKFSSASKYAALSVDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GNSSRGPGDGGNRDHWKESDRKDGKKDQDSRSAPEPKKPEENPASKFSSASKYAALSVDG
              550       560       570       580       590       600

              610 
pF1KB9 EDENEGEDYAE
       :::::::::::
CCDS41 EDENEGEDYAE
              610 

>>CCDS73474.1 EIF4B gene_id:1975|Hs108|chr12              (616 aa)
 initn: 3000 init1: 3000 opt: 4174  Z-score: 2270.8  bits: 430.3 E(32554): 3.7e-120
Smith-Waterman score: 4174; 99.0% identity (99.2% similar) in 616 aa overlap (1-611:1-616)

               10        20        30        40        50        60
pF1KB9 MAASAKKKNKKGKTISLTDFLAEDGGTGGGSTYVSKPVSWADETDDLEGDVSTTWHSNDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAASAKKKNKKGKTISLTDFLAEDGGTGGGSTYVSKPVSWADETDDLEGDVSTTWHSNDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DVYRAPPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DVYRAPPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQDKDRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQDKDRD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYDSDRYRDGYRDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYDSDRYRDGYRDG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGDRYED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGDRYED
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSTRAASI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSTRAASI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERERSRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERERSRT
              370       380       390       400       410       420

              430            440       450       460       470     
pF1KB9 GSESSQTGTSTTSSR-----NARRRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMP
       :::::::::::::::     .:::::::::::::::::::::::::::::::::::::::
CCDS73 GSESSQTGTSTTSSRSKSDQDARRRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMP
              430       440       450       460       470       480

         480       490       500       510       520       530     
pF1KB9 APPPKENAWVKRSSNPPARSQSSDTEQQSPTSGGGKVAPAQPSEEGPGRKDENKVDGMNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 APPPKENAWVKRSSNPPARSQSSDTEQQSPTSGGGKVAPAQPSEEGPGRKDENKVDGMNA
              490       500       510       520       530       540

         540       550       560       570       580       590     
pF1KB9 PKGQTGNSSRGPGDGGNRDHWKESDRKDGKKDQDSRSAPEPKKPEENPASKFSSASKYAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PKGQTGNSSRGPGDGGNRDHWKESDRKDGKKDQDSRSAPEPKKPEENPASKFSSASKYAA
              550       560       570       580       590       600

         600       610 
pF1KB9 LSVDGEDENEGEDYAE
       ::::::::::::::::
CCDS73 LSVDGEDENEGEDYAE
              610      




611 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:59:51 2016 done: Thu Nov  3 23:59:52 2016
 Total Scan time:  4.540 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]