FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9493, 197 aa
  1>>>pF1KB9493 197 - 197 aa - 197 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7254+/-0.00084; mu= 11.3925+/- 0.050
 mean_var=92.4300+/-18.160, 0's: 0 Z-trim(109.1): 184  B-trim: 166 in 1/49
 Lambda= 0.133404
 statistics sampled from 10410 (10654) to 10410 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.327), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS7864.1 LIN7C gene_id:55327|Hs108|chr11         ( 197) 1263 252.8   1e-67
CCDS12757.1 LIN7B gene_id:64130|Hs108|chr19        ( 207) 1109 223.1   9e-59
CCDS9021.1 LIN7A gene_id:8825|Hs108|chr12          ( 233) 1039 209.7 1.1e-54
CCDS77328.1 LIN7B gene_id:64130|Hs108|chr19        ( 137)  406 87.7 3.5e-18


>>CCDS7864.1 LIN7C gene_id:55327|Hs108|chr11              (197 aa)
 initn: 1263 init1: 1263 opt: 1263  Z-score: 1329.1  bits: 252.8 E(32554): 1e-67
Smith-Waterman score: 1263; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KB9 MAALGEPVRLERDICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MAALGEPVRLERDICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VDISSSPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VDISSSPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RIIPGGIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RIIPGGIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEE
              130       140       150       160       170       180

              190       
pF1KB9 MESRFEKMRSAKRRQQT
       :::::::::::::::::
CCDS78 MESRFEKMRSAKRRQQT
              190       

>>CCDS12757.1 LIN7B gene_id:64130|Hs108|chr19             (207 aa)
 initn: 1109 init1: 1109 opt: 1109  Z-score: 1168.6  bits: 223.1 E(32554): 9e-59
Smith-Waterman score: 1109; 84.7% identity (98.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KB9 MAALGEPVRLERDICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYET
       :::: ::. ::::. ::.::::.::::::.::::::::::::::.::.:.:::::..:.:
CCDS12 MAALVEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VDISSSPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYIS
       .::..: :.::.::::::::::.:::::.::::::::::.::::::::::::::::::::
CCDS12 LDITGSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RIIPGGIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEE
       :.::::.::::::::::::::::::::::::.:::::::::::::.:::::::::.::::
CCDS12 RVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEE
              130       140       150       160       170       180

              190                 
pF1KB9 MESRFEKMRSAKRRQQT          
       ::.::::::::.::::           
CCDS12 MEARFEKMRSARRRQQHQSYSSLESRG
              190       200       

>>CCDS9021.1 LIN7A gene_id:8825|Hs108|chr12               (233 aa)
 initn: 1038 init1: 1038 opt: 1039  Z-score: 1095.1  bits: 209.7 E(32554): 1.1e-54
Smith-Waterman score: 1039; 79.3% identity (94.4% similar) in 198 aa overlap (1-196:14-211)

                              10        20        30        40     
pF1KB9              MAALG--EPVRLERDICRAIELLEKLQRSGEVPPQKLQALQRVLQSE
                    ::.:   .:. :.::. ::::::::::.::::: .:::.:..:::::
CCDS90 MLKPSVTSAPTADMATLTVVQPLTLDRDVARAIELLEKLQESGEVPVHKLQSLKKVLQSE
               10        20        30        40        50        60

          50        60        70        80        90       100     
pF1KB9 FCNAVREVYEHVYETVDISSSPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEGLGF
       ::.:.::::....::. ... :: :: :::::::::::::::::::::::::::.:::::
CCDS90 FCTAIREVYQYMHETITVNGCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGF
               70        80        90       100       110       120

         110       120       130       140       150       160     
pF1KB9 NIMGGKEQNSPIYISRIIPGGIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQG
       :.:::::::::::::::::::.:.::::::::::::::::::::::::::::::::::. 
CCDS90 NVMGGKEQNSPIYISRIIPGGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKD
              130       140       150       160       170       180

         170       180       190                            
pF1KB9 KVKLVVRYTPKVLEEMESRFEKMRSAKRRQQT                     
       .::::::::::::::::.::::.:.:.::::                      
CCDS90 SVKLVVRYTPKVLEEMEARFEKLRTARRRQQQQLLIQQQQQQQQQQTQQNHMS
              190       200       210       220       230   

>>CCDS77328.1 LIN7B gene_id:64130|Hs108|chr19             (137 aa)
 initn: 416 init1: 377 opt: 406  Z-score: 439.9  bits: 87.7 E(32554): 3.5e-18
Smith-Waterman score: 513; 51.5% identity (62.2% similar) in 196 aa overlap (1-196:1-126)

               10        20        30        40        50        60
pF1KB9 MAALGEPVRLERDICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYET
       :::: ::. ::::. ::.::::.::::::.::::::::::::::.::.:.:::::..:.:
CCDS77 MAALVEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VDISSSPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYIS
       .::..: :.::.::::                                            
CCDS77 LDITGSAEIRAHATAK--------------------------------------------
               70                                                  

              130       140       150       160       170       180
pF1KB9 RIIPGGIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEE
                                 :::::.:::::::::::::.:::::::::.::::
CCDS77 --------------------------SVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEE
                                   80        90       100       110

              190                 
pF1KB9 MESRFEKMRSAKRRQQT          
       ::.::::::::.::::           
CCDS77 MEARFEKMRSARRRQQHQSYSSLESRG
              120       130       




197 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:56:40 2016 done: Thu Nov  3 23:56:40 2016
 Total Scan time:  1.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]