FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9492, 1203 aa
  1>>>pF1KB9492 1203 - 1203 aa - 1203 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8914+/-0.00113; mu= 18.6503+/- 0.067
 mean_var=65.7739+/-13.463, 0's: 0 Z-trim(101.2): 30  B-trim: 0 in 0/48
 Lambda= 0.158142
 statistics sampled from 6412 (6421) to 6412 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.545), E-opt: 0.2 (0.197), width:  16
 Scan time:  3.670

The best scores are:                                      opt bits E(32554)
CCDS5039.1 MMS22L gene_id:253714|Hs108|chr6        (1243) 5244 1206.3       0


>>CCDS5039.1 MMS22L gene_id:253714|Hs108|chr6             (1243 aa)
 initn: 7917 init1: 5244 opt: 5244  Z-score: 6453.9  bits: 1206.3 E(32554):    0
Smith-Waterman score: 7788; 96.6% identity (96.7% similar) in 1235 aa overlap (9-1203:9-1243)

               10        20        30        40        50        60
pF1KB9 MENCSAASTFLTDSLELELGTEWCKPPYFSCAVDNRGGGKHFSGESYLCSGALKRLILNL
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MENCSAASTFLTDSLELELGTEWCKPPYFSCAVDNRGGGKHFSGESYLCSGALKRLILNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DPLPTNFEEDTLEIFGIQWVTETALVNSSRELFHLFRQQLYNLETLLQSSCDFGKVSTLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 DPLPTNFEEDTLEIFGIQWVTETALVNSSRELFHLFRQQLYNLETLLQSSCDFGKVSTLH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CKADNIRQQCVLFLHYVKVFIFRYLKVQNAESHVPVHPYEALEAQLPSVLIDELHGLLLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 CKADNIRQQCVLFLHYVKVFIFRYLKVQNAESHVPVHPYEALEAQLPSVLIDELHGLLLY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 IGHLSELPSVNIGAFVNQNQIKLFPPSWHLLHLHLDIHWLVLEILYMLGEKLKQVVYGHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 IGHLSELPSVNIGAFVNQNQIKLFPPSWHLLHLHLDIHWLVLEILYMLGEKLKQVVYGHQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 FMNLASDNLTNISLFEEHCETLLCDLISLSLNRYDKVRSSESLMSDQCPCLCIKELWVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 FMNLASDNLTNISLFEEHCETLLCDLISLSLNRYDKVRSSESLMSDQCPCLCIKELWVLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 IHLLDHRSKWFVSESFWNWLNKLLKTLLEKSSDRRRSSMPVIQSRDPLGFSWWIITHVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 IHLLDHRSKWFVSESFWNWLNKLLKTLLEKSSDRRRSSMPVIQSRDPLGFSWWIITHVAS
              310       320       330       340       350       360

              370       380       390                              
pF1KB9 FYKFDRHGVPDEMRKVESNWNFVEELLKKSISVQ--------------------------
       ::::::::::::::::::::::::::::::::::                          
CCDS50 FYKFDRHGVPDEMRKVESNWNFVEELLKKSISVQGVILEEQLRMYLHCCLTLCDFWEPNI
              370       380       390       400       410       420

                        400       410       420       430       440
pF1KB9 --------------NSSFSISWLPFKGLANTMKSPLSMLEMVKTCCCDKQDQELYKSSSS
                     ::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 AIVTILWEYYSKNLNSSFSISWLPFKGLANTMKSPLSMLEMVKTCCCDKQDQELYKSSSS
              430       440       450       460       470       480

              450       460       470       480       490       500
pF1KB9 YTIFLCILAKVVKKAMKSNGPHPWKQVKGRIYSKFHQKRMEELTEVGLQNFFSLFLLLAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 YTIFLCILAKVVKKAMKSNGPHPWKQVKGRIYSKFHQKRMEELTEVGLQNFFSLFLLLAA
              490       500       510       520       530       540

              510       520       530       540       550       560
pF1KB9 VAEVEDVASHVLDLLNFLKPAFVMSQRALIWKGHMAFLLMYAQKNLDIGVLAEKFSCAFR
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS50 VAEVEDVASHVLDLLNFLKPAFVTSQRALIWKGHMAFLLMYAQKNLDIGVLAEKFSCAFR
              550       560       570       580       590       600

              570       580       590       600       610       620
pF1KB9 EKAKEFLVSKNEEMVQRQTIWTLLSIYIDGVQEVFETSYCLYPSHEKLLNDGFSMLLRAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 EKAKEFLVSKNEEMVQRQTIWTLLSIYIDGVQEVFETSYCLYPSHEKLLNDGFSMLLRAC
              610       620       630       640       650       660

              630       640       650       660       670       680
pF1KB9 RESELRTVLSFLQAVLARIRSMHQQLCQELQRDNVDLFVQSSLSAKERHLAAVASALWRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 RESELRTVLSFLQAVLARIRSMHQQLCQELQRDNVDLFVQSSLSAKERHLAAVASALWRH
              670       680       690       700       710       720

              690       700       710       720       730       740
pF1KB9 FFSFLKSQRMSQVVPFSQLADAAADFTLLAMDMPSTAPSDFQPQPVISIIQLFGWDDIIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 FFSFLKSQRMSQVVPFSQLADAAADFTLLAMDMPSTAPSDFQPQPVISIIQLFGWDDIIC
              730       740       750       760       770       780

              750       760       770       780       790       800
pF1KB9 PQVVARYLSHVLQNSTLCEALSHSGYVSFQALTVRSWIRCVLQMYIKNLSGPDDLLIDKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 PQVVARYLSHVLQNSTLCEALSHSGYVSFQALTVRSWIRCVLQMYIKNLSGPDDLLIDKN
              790       800       810       820       830       840

              810       820       830       840       850       860
pF1KB9 LEEAVEKEYMKQLVKLTRLLFNLSEVKSIFSKAQAEYLSISEDPKKALVRFFEAVGVTYG
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS50 LEEAVEKEYMKQLVKLTRLLFNLSEVKSIFSKAQVEYLSISEDPKKALVRFFEAVGVTYG
              850       860       870       880       890       900

              870       880       890       900       910       920
pF1KB9 NVQTLSDKSAMVTKSLEYLGEVLKYIKPYLGKKVFSAGLQLTYGMMGILVKSWAQIFATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 NVQTLSDKSAMVTKSLEYLGEVLKYIKPYLGKKVFSAGLQLTYGMMGILVKSWAQIFATS
              910       920       930       940       950       960

              930       940       950       960       970       980
pF1KB9 KAQKLLFRIIDCLLLPHAVLQQEKELPAPMLSAIQKSLPLYLQGMCIVCCQSQNPNAYLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 KAQKLLFRIIDCLLLPHAVLQQEKELPAPMLSAIQKSLPLYLQGMCIVCCQSQNPNAYLN
              970       980       990      1000      1010      1020

              990      1000      1010      1020      1030      1040
pF1KB9 QLLGNVIEQYIGRFLPASPYVSDLGQHPVLLALRNTATIPPISSLKKCIVQVIRKSYLEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 QLLGNVIEQYIGRFLPASPYVSDLGQHPVLLALRNTATIPPISSLKKCIVQVIRKSYLEY
             1030      1040      1050      1060      1070      1080

             1050      1060      1070      1080      1090      1100
pF1KB9 KGSSPPPRLASILAFILQLFKETNTDIYEVELLLPGILKCLVLVSEPQVKRLATENLQYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 KGSSPPPRLASILAFILQLFKETNTDIYEVELLLPGILKCLVLVSEPQVKRLATENLQYM
             1090      1100      1110      1120      1130      1140

             1110      1120      1130      1140      1150      1160
pF1KB9 VKACQVGSEEEPSSQLTSVFRQFIQDYGMRYYYQVYSILETVATLDQQVVIHLISTLTQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 VKACQVGSEEEPSSQLTSVFRQFIQDYGMRYYYQVYSILETVATLDQQVVIHLISTLTQS
             1150      1160      1170      1180      1190      1200

             1170      1180      1190      1200   
pF1KB9 LKDSEQKWGLGRNIAQREAYSKLLSHLGQMGQDEMQRLENDNT
       :::::::::::::::::::::::::::::::::::::::::::
CCDS50 LKDSEQKWGLGRNIAQREAYSKLLSHLGQMGQDEMQRLENDNT
             1210      1220      1230      1240   




1203 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:56:04 2016 done: Thu Nov  3 23:56:05 2016
 Total Scan time:  3.670 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]