Result of FASTA (ccds) for
pF1KB9490
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9490, 1188 aa
1>>>pF1KB9490 1188 - 1188 aa - 1188 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9519+/-0.00112; mu= 15.4202+/- 0.067
mean_var=127.0435+/-25.506, 0's: 0 Z-trim(106.8): 25 B-trim: 80 in 1/50
Lambda= 0.113788
statistics sampled from 9171 (9183) to 9171 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.282), width: 16
Scan time: 3.890
The best scores are: opt bits E(32554)
CCDS43384.1 FBXO38 gene_id:81545|Hs108|chr5 (1113) 5496 914.7 0
CCDS64285.1 FBXO38 gene_id:81545|Hs108|chr5 ( 943) 4330 723.2 7.1e-208
>>CCDS43384.1 FBXO38 gene_id:81545|Hs108|chr5 (1113 aa)
initn: 7544 init1: 5496 opt: 5496 Z-score: 4879.0 bits: 914.7 E(32554): 0
Smith-Waterman score: 7398; 93.7% identity (93.7% similar) in 1188 aa overlap (1-1188:1-1113)
10 20 30 40 50 60
pF1KB9 MGPRKKSVKTCIMNNEIPEEMTADETKDYMNQLSHEVLCHIFRYLPLQDIMCMECLSRKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGPRKKSVKTCIMNNEIPEEMTADETKDYMNQLSHEVLCHIFRYLPLQDIMCMECLSRKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KEAVTLYLRVVRVVDLCAGRWWEYMPSGFTDASFLTLLKKMPDVEQLYGLHPRYLERRRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KEAVTLYLRVVRVVDLCAGRWWEYMPSGFTDASFLTLLKKMPDVEQLYGLHPRYLERRRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RGHEAFSIPGVLEALQACPNLVGVETSHLELVESIWTYMPHVHILGKFRNRNGAFPIPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RGHEAFSIPGVLEALQACPNLVGVETSHLELVESIWTYMPHVHILGKFRNRNGAFPIPPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 NKLKIPIGAKIQTLHLVGVNVPEIPCIPMLRHLYMKWVRLTKPQPFKDFLCISLRTFVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NKLKIPIGAKIQTLHLVGVNVPEIPCIPMLRHLYMKWVRLTKPQPFKDFLCISLRTFVMR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 NCAGPTNSLKYVPLVTGLASARNLEHLEMVRVPFLGGLIQHVVEDSWRSGGFRNLHTIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NCAGPTNSLKYVPLVTGLASARNLEHLEMVRVPFLGGLIQHVVEDSWRSGGFRNLHTIVL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 GACKNALEVDLGYLIITAARRLHEVRIQPSLTKDGVFSALKMAELEFPQFETLHLGYVDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GACKNALEVDLGYLIITAARRLHEVRIQPSLTKDGVFSALKMAELEFPQFETLHLGYVDE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FLLQSRMANADLVKYGLADVVENPGIITDIGMKAVNEVFSCIKYLAIYNCPHLHNPYNWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FLLQSRMANADLVKYGLADVVENPGIITDIGMKAVNEVFSCIKYLAIYNCPHLHNPYNWI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 SDHSRWTRLVDINLVRCHALKLDSFGQFIELLPSLEFISLDQMFREPPKGCARVGLSAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SDHSRWTRLVDINLVRCHALKLDSFGQFIELLPSLEFISLDQMFREPPKGCARVGLSAGT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 GIGVSSALVSNQNSNNDDNNAQNNNANIHDNNHHHPDDSDEENDFRQDLQPGEQQFAADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GIGVSSALVSNQNSNNDDNNAQNNNANIHDNNHHHPDDSDEENDFRQDLQPGEQQFAADA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 LNEMEDIVQEDGEVVAESGNNTPAHSQAIIPVDVDEEQAGPSGLQRVVKPTSITVHDSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LNEMEDIVQEDGEVVAESGNNTPAHSQAIIPVDVDEEQAGPSGLQRVVKPTSITVHDSES
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 DDEEDSLELQEVWIPKNGTRRYSEREEKTGESVQSRELSVSGKGKTPLRKRYNSHQMGQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DDEEDSLELQEVWIPKNGTRRYSEREEKTGESVQSRELSVSGKGKTPLRKRYNSHQMGQS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 KQFPLEESSCEKGCQVTSEQIKADMKAARDIPEKKKNKDVYPSCSSTTASTVGNSSSHNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KQFPLEESSCEKGCQVTSEQIKADMKAARDIPEKKKNKDVYPSCSSTTASTVGNSSSHNT
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 ASQSPDFVRTVNSGGSSEPSPTEVDVSRQCACSPGGSEDSEAMEEGDAESSVCPRCCCHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ASQSPDFVRTVNSGGSSEPSPTEVDVSRQCACSPGGSEDSEAMEEGDAESSVCPRCCCHR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 PQESQRRTSRCSDEERPSTSRACVVNGPDGTRSAFSFRTLPQGGSSGPAHDERTNGSGSG
:::::::::::::::::::::::::::::
CCDS43 PQESQRRTSRCSDEERPSTSRACVVNGPD-------------------------------
790 800
850 860 870 880 890 900
pF1KB9 ATGEDRRGSSQPESCDVQSNEDYPRRPLTRARSRLSHVLLVSESEVAKTKPRHAMKRKRT
::::::::::::::::
CCDS43 --------------------------------------------EVAKTKPRHAMKRKRT
810 820
910 920 930 940 950 960
pF1KB9 ADKSTSTSDPVIEDDHVQVLVLKSKNLVGVTMTNCGITDLVLKDCPKMMFIHATRCRVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ADKSTSTSDPVIEDDHVQVLVLKSKNLVGVTMTNCGITDLVLKDCPKMMFIHATRCRVLK
830 840 850 860 870 880
970 980 990 1000 1010 1020
pF1KB9 HLKVENAPIVNRFDYAQCKKLNMDQVLDQILRMPPERNRIIYLRPMQQVDTLTLEQKLFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HLKVENAPIVNRFDYAQCKKLNMDQVLDQILRMPPERNRIIYLRPMQQVDTLTLEQKLFS
890 900 910 920 930 940
1030 1040 1050 1060 1070 1080
pF1KB9 GPYPYHICIIHEFSNPPNVRNKVRIRSWMDTIANINQELIKYEFFPEATRSEEDLKKYPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GPYPYHICIIHEFSNPPNVRNKVRIRSWMDTIANINQELIKYEFFPEATRSEEDLKKYPK
950 960 970 980 990 1000
1090 1100 1110 1120 1130 1140
pF1KB9 YPWGREIYTLEGVVDGAPYSMISDFPWLRSLRAAEPNSFARYDFEDDEESTIYAPRRKGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YPWGREIYTLEGVVDGAPYSMISDFPWLRSLRAAEPNSFARYDFEDDEESTIYAPRRKGQ
1010 1020 1030 1040 1050 1060
1150 1160 1170 1180
pF1KB9 LSADICMETIGEEISEMRQMKKGVFQRVVAIFIHYCDVNGEPVEDDYI
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LSADICMETIGEEISEMRQMKKGVFQRVVAIFIHYCDVNGEPVEDDYI
1070 1080 1090 1100 1110
>>CCDS64285.1 FBXO38 gene_id:81545|Hs108|chr5 (943 aa)
initn: 4330 init1: 4330 opt: 4330 Z-score: 3845.5 bits: 723.2 E(32554): 7.1e-208
Smith-Waterman score: 5887; 79.4% identity (79.4% similar) in 1188 aa overlap (1-1188:1-943)
10 20 30 40 50 60
pF1KB9 MGPRKKSVKTCIMNNEIPEEMTADETKDYMNQLSHEVLCHIFRYLPLQDIMCMECLSRKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MGPRKKSVKTCIMNNEIPEEMTADETKDYMNQLSHEVLCHIFRYLPLQDIMCMECLSRKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KEAVTLYLRVVRVVDLCAGRWWEYMPSGFTDASFLTLLKKMPDVEQLYGLHPRYLERRRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KEAVTLYLRVVRVVDLCAGRWWEYMPSGFTDASFLTLLKKMPDVEQLYGLHPRYLERRRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RGHEAFSIPGVLEALQACPNLVGVETSHLELVESIWTYMPHVHILGKFRNRNGAFPIPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RGHEAFSIPGVLEALQACPNLVGVETSHLELVESIWTYMPHVHILGKFRNRNGAFPIPPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 NKLKIPIGAKIQTLHLVGVNVPEIPCIPMLRHLYMKWVRLTKPQPFKDFLCISLRTFVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 NKLKIPIGAKIQTLHLVGVNVPEIPCIPMLRHLYMKWVRLTKPQPFKDFLCISLRTFVMR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 NCAGPTNSLKYVPLVTGLASARNLEHLEMVRVPFLGGLIQHVVEDSWRSGGFRNLHTIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 NCAGPTNSLKYVPLVTGLASARNLEHLEMVRVPFLGGLIQHVVEDSWRSGGFRNLHTIVL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 GACKNALEVDLGYLIITAARRLHEVRIQPSLTKDGVFSALKMAELEFPQFETLHLGYVDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GACKNALEVDLGYLIITAARRLHEVRIQPSLTKDGVFSALKMAELEFPQFETLHLGYVDE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FLLQSRMANADLVKYGLADVVENPGIITDIGMKAVNEVFSCIKYLAIYNCPHLHNPYNWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FLLQSRMANADLVKYGLADVVENPGIITDIGMKAVNEVFSCIKYLAIYNCPHLHNPYNWI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 SDHSRWTRLVDINLVRCHALKLDSFGQFIELLPSLEFISLDQMFREPPKGCARVGLSAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SDHSRWTRLVDINLVRCHALKLDSFGQFIELLPSLEFISLDQMFREPPKGCARVGLSAGT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 GIGVSSALVSNQNSNNDDNNAQNNNANIHDNNHHHPDDSDEENDFRQDLQPGEQQFAADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GIGVSSALVSNQNSNNDDNNAQNNNANIHDNNHHHPDDSDEENDFRQDLQPGEQQFAADA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 LNEMEDIVQEDGEVVAESGNNTPAHSQAIIPVDVDEEQAGPSGLQRVVKPTSITVHDSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LNEMEDIVQEDGEVVAESGNNTPAHSQAIIPVDVDEEQAGPSGLQRVVKPTSITVHDSES
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 DDEEDSLELQEVWIPKNGTRRYSEREEKTGESVQSRELSVSGKGKTPLRKRYNSHQMGQS
:::::::::::::::::::::::::::::::::::::::
CCDS64 DDEEDSLELQEVWIPKNGTRRYSEREEKTGESVQSRELS---------------------
610 620 630
670 680 690 700 710 720
pF1KB9 KQFPLEESSCEKGCQVTSEQIKADMKAARDIPEKKKNKDVYPSCSSTTASTVGNSSSHNT
CCDS64 ------------------------------------------------------------
730 740 750 760 770 780
pF1KB9 ASQSPDFVRTVNSGGSSEPSPTEVDVSRQCACSPGGSEDSEAMEEGDAESSVCPRCCCHR
CCDS64 ------------------------------------------------------------
790 800 810 820 830 840
pF1KB9 PQESQRRTSRCSDEERPSTSRACVVNGPDGTRSAFSFRTLPQGGSSGPAHDERTNGSGSG
CCDS64 ------------------------------------------------------------
850 860 870 880 890 900
pF1KB9 ATGEDRRGSSQPESCDVQSNEDYPRRPLTRARSRLSHVLLVSESEVAKTKPRHAMKRKRT
::::::::::::::::
CCDS64 --------------------------------------------EVAKTKPRHAMKRKRT
640 650
910 920 930 940 950 960
pF1KB9 ADKSTSTSDPVIEDDHVQVLVLKSKNLVGVTMTNCGITDLVLKDCPKMMFIHATRCRVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ADKSTSTSDPVIEDDHVQVLVLKSKNLVGVTMTNCGITDLVLKDCPKMMFIHATRCRVLK
660 670 680 690 700 710
970 980 990 1000 1010 1020
pF1KB9 HLKVENAPIVNRFDYAQCKKLNMDQVLDQILRMPPERNRIIYLRPMQQVDTLTLEQKLFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 HLKVENAPIVNRFDYAQCKKLNMDQVLDQILRMPPERNRIIYLRPMQQVDTLTLEQKLFS
720 730 740 750 760 770
1030 1040 1050 1060 1070 1080
pF1KB9 GPYPYHICIIHEFSNPPNVRNKVRIRSWMDTIANINQELIKYEFFPEATRSEEDLKKYPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GPYPYHICIIHEFSNPPNVRNKVRIRSWMDTIANINQELIKYEFFPEATRSEEDLKKYPK
780 790 800 810 820 830
1090 1100 1110 1120 1130 1140
pF1KB9 YPWGREIYTLEGVVDGAPYSMISDFPWLRSLRAAEPNSFARYDFEDDEESTIYAPRRKGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 YPWGREIYTLEGVVDGAPYSMISDFPWLRSLRAAEPNSFARYDFEDDEESTIYAPRRKGQ
840 850 860 870 880 890
1150 1160 1170 1180
pF1KB9 LSADICMETIGEEISEMRQMKKGVFQRVVAIFIHYCDVNGEPVEDDYI
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LSADICMETIGEEISEMRQMKKGVFQRVVAIFIHYCDVNGEPVEDDYI
900 910 920 930 940
1188 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:54:30 2016 done: Thu Nov 3 23:54:31 2016
Total Scan time: 3.890 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]